Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0572
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    67   1e-12
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   3.6  
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    25   6.3  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   6.3  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    24   8.4  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 66.9 bits (156), Expect = 1e-12
 Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
 Frame = +1

Query: 1   DELNNPLITLKSIGHQ*Y*RYEYSDF-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXX 165
           DE+  P +T+K+IG Q +  YE +DF       + FDSY++P  +++    R L+VD   
Sbjct: 104 DEVQKPSMTVKAIGRQWFWSYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRL 163

Query: 166 XXXXXXXXXXXXTATDVIHS*TIPSLGIKVMLIQVD*IKQTSLLIDLE 309
                       T+ DVIHS  +PSLGIK   I    + Q SL ID E
Sbjct: 164 VLPIDTRIRLILTSGDVIHSWAVPSLGIKCDCIP-SRLNQVSLSIDRE 210



 Score = 54.0 bits (124), Expect = 9e-09
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 255 DANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIV 368
           D  P RLNQ +  I+R G+F+GQCSE+CG  HS +PIV
Sbjct: 194 DCIPSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPIV 231


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 182 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 69
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = -2

Query: 191 RIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSIL 81
           ++W+   +I  +S +NSR ++  +  DG++    +++
Sbjct: 21  KVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLM 57


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 160 DYLHLIVGIHYFLFHWMGLY 101
           D+  L++GIH F +H   LY
Sbjct: 398 DFWSLVIGIHVFGYHVYWLY 417


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = -2

Query: 191 RIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSIL 81
           ++W+   +I  +S +NSR ++  +  DG++    +++
Sbjct: 21  KVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLM 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,467,059
Number of Sequences: 5004
Number of extensions: 26067
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)