Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0572
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                        81   4e-16
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                        81   4e-16
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        81   4e-16
SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 81.0 bits (191), Expect = 4e-16
 Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
 Frame = +1

Query: 1   DELNNPLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXX 174
           DE+ +P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD      
Sbjct: 96  DEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVP 155

Query: 175 XXXXXXXXXTATDVIHS*TIPSLGIKV 255
                    TA DVIHS  +P+L +K+
Sbjct: 156 INTHVRVLITAADVIHSFAVPALAVKM 182



 Score = 77.8 bits (183), Expect = 3e-15
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = +3

Query: 255 DANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIV 368
           DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIV
Sbjct: 183 DAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIV 220


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 81.0 bits (191), Expect = 4e-16
 Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
 Frame = +1

Query: 1   DELNNPLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXX 174
           DE+ +P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD      
Sbjct: 96  DEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVP 155

Query: 175 XXXXXXXXXTATDVIHS*TIPSLGIKV 255
                    TA DVIHS  +P+L +K+
Sbjct: 156 INTHVRVLITAADVIHSFAVPALAVKM 182



 Score = 77.8 bits (183), Expect = 3e-15
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = +3

Query: 255 DANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIV 368
           DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIV
Sbjct: 183 DAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIV 220


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 81.0 bits (191), Expect = 4e-16
 Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
 Frame = +1

Query: 1   DELNNPLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXX 174
           DE+ +P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD      
Sbjct: 96  DEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVP 155

Query: 175 XXXXXXXXXTATDVIHS*TIPSLGIKV 255
                    TA DVIHS  +P+L +K+
Sbjct: 156 INTHVRVLITAADVIHSFAVPALAVKM 182



 Score = 29.9 bits (64), Expect = 0.89
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +3

Query: 255 DANPGRLNQTNFFINRPGIF 314
           DA PGRLNQT FFI +   F
Sbjct: 183 DAVPGRLNQTGFFIKKTWSF 202


>SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 163 YDYLHLIVGIHYFLFHWMGLYMSQIQYY*NLNIHIFS 53
           YD +H    IHY   H+  ++   IQYY   NIH ++
Sbjct: 31  YDNIHYD-NIHYDNIHYDNIHYDNIQYY---NIHYYN 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,508,234
Number of Sequences: 59808
Number of extensions: 153501
Number of successful extensions: 216
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)