Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0571
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   119   2e-28
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   119   2e-28
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    30   0.19 
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   1.8  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   4.1  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   5.4  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    25   5.4  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   5.4  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   9.5  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  119 bits (287), Expect = 2e-28
 Identities = 52/66 (78%), Positives = 61/66 (92%)
 Frame = +1

Query: 55  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 234
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74

Query: 235 IKNGKK 252
           IKNGKK
Sbjct: 75  IKNGKK 80



 Score =  105 bits (253), Expect = 3e-24
 Identities = 48/65 (73%), Positives = 56/65 (86%)
 Frame = +3

Query: 246 KESTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 425
           K+ TAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKK
Sbjct: 79  KKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKK 138

Query: 426 ERPRS 440
           E+PR+
Sbjct: 139 EKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  119 bits (287), Expect = 2e-28
 Identities = 52/66 (78%), Positives = 61/66 (92%)
 Frame = +1

Query: 55  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 234
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74

Query: 235 IKNGKK 252
           IKNGKK
Sbjct: 75  IKNGKK 80



 Score =  105 bits (253), Expect = 3e-24
 Identities = 48/65 (73%), Positives = 56/65 (86%)
 Frame = +3

Query: 246 KESTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 425
           K+ TAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKK
Sbjct: 79  KKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKK 138

Query: 426 ERPRS 440
           E+PR+
Sbjct: 139 EKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 139 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 234
           G+   +G+      V+ K+PNSA+RK  RV+L
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL 78


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -1

Query: 180 TNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFTTVVHVLRAVRIPRGLPIW 10
           ++F +D++ C  CT   V+LP       LE F  PS    V H++ A  +P+ +P W
Sbjct: 302 SDFRQDESYCRICTQSCVTLP-----DILEAF--PSCHPPVDHLISA--LPQLMPRW 349


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 379 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 269
           +++K  P + P   P  P+ AT+TSS  +++   PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 76  WADKEFKKAHMGTKWKANPFGGASHAKGIV 165
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -1

Query: 426 PFSLCRERGETRWLLLPP*NELRECHRRRDLYDRIPPLVLRRFLRCGLGNRHGGRMRYFL 247
           P+S   ER E RW L    N +   H+   ++        +RF+R G+   + G   ++ 
Sbjct: 255 PYSRYLERREQRWKLFLQENGIDYIHQSPSIFPS-RSAKTQRFIRKGIPPEYRGNAWFYY 313

Query: 246 S 244
           S
Sbjct: 314 S 314


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 437 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 315
           SW L+++ V S+E+  GY   L     N+ D  G+    ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 267 PRDGCLNHIEENDEVLVAGFGRKGHAVG 350
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,462
Number of Sequences: 5004
Number of extensions: 48950
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)