Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0570
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    27   2.4  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   4.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   5.5  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   7.3  
SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.7  

>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 372 TMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFF 253
           T  GS+   GA LG  A++ G+G+ + GS        G F
Sbjct: 203 TPGGSSGGEGALLGIKASVLGIGSDIGGSIRSPAANNGLF 242


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 93  GPALVEA-PIVPSPVHVGPLVPGQLTPLVHILINI 194
           G AL+   PIV S  H+ P   G+L P +H  +++
Sbjct: 781 GAALLSKFPIVNSTHHLLPSPQGELAPAIHATLDV 815


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 84  PDVGPALVEAPIVPSPVHVGPLVP 155
           P V P + EAP VP P  V P+ P
Sbjct: 592 PPVAPVVPEAPSVPQP-PVAPVAP 614



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 84  PDVGPALVEAPIVPSPVHVGPLVP 155
           P V P   E P VP P  V P+VP
Sbjct: 577 PPVAPVAPEVPSVPQP-PVAPVVP 599


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 366 AGSATI-TGATLGPSATITGLGTMMAGSAMITGETAGFFQHLIVQ 235
           AG  T+  G  LG     T LGT++  + MIT    GF   + +Q
Sbjct: 199 AGLGTLFAGLGLGTMIGATYLGTLITSAPMITALFGGFGAKMSMQ 243


>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 79

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 466 DEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVS 356
           ++ +   H G V  +H  + G+V   + A  HN  VS
Sbjct: 28  EKEYLEEHEGEVGEEHQKNTGNVRGGYKAAMHNPNVS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,612,394
Number of Sequences: 5004
Number of extensions: 25215
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)