Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0570
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0141 - 937428-937717,938483-938705 32 0.47
06_03_0339 - 19687749-19690805 31 1.1
12_02_0306 + 17307166-17309091 29 2.5
06_02_0124 + 12116278-12116374,12116595-12116881 29 4.3
06_02_0125 + 12122812-12122911,12123647-12123993 28 5.7
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 28 7.6
02_05_1332 + 35758657-35758728,35758959-35760689 28 7.6
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 31.9 bits (69), Expect = 0.47
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -1
Query: 436 RVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRL 257
++SH HG H G+ GH+GG+ H G+ L + + G HG + L
Sbjct: 100 KLSHGHG-HGGYGYG-----GHHGGLFGGHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGL 153
Query: 256 F 254
F
Sbjct: 154 F 154
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 448 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 338
GH+G + H GH G + H H GG+ H G+
Sbjct: 114 GHHGGLFGGHHGHHGGLFGGHHGH-HGGGLFGGHHGH 149
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -1
Query: 448 GHNGRVSHDHGGHQGHVTNVHWA--RGHNGGVSHDHRGY 338
GH+G GGH GH + GH+GG+ H G+
Sbjct: 122 GHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGLFGGHHGF 160
>06_03_0339 - 19687749-19690805
Length = 1018
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = -1
Query: 433 VSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRLF 254
V + G H HV A G+ G + R + ++ GN+ +A ++ R +F
Sbjct: 262 VHANFGSHNAHVETKRGADGNEAGGLKNKRKFAKATGNSSKA----SSVAGSKKRRKAMF 317
Query: 253 STFDCSGSTLST 218
+ + S S ST
Sbjct: 318 ESSESSASDTST 329
>12_02_0306 + 17307166-17309091
Length = 641
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 283
G+G T+ G GA +G S T G GT+ G A
Sbjct: 473 GVGVTLVGVGAWAGADVGSSLTEGGGGTLCGGDA 506
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 283
G+G T+ G GA +G S T G GT+ G A
Sbjct: 206 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGA 239
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 283
G+G T+ G GA +G S T G GT+ G A
Sbjct: 357 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGA 390
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 283
G+G T+ G GA +G S T G GT+ G A
Sbjct: 95 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 128
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 283
G+G T+ G GA +G S T G GT+ G A
Sbjct: 397 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 430
>06_02_0124 + 12116278-12116374,12116595-12116881
Length = 127
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Frame = -1
Query: 466 DEHWARG-HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-------HRGYTRSLGNNYR 311
D+ W G H+G GG+ G + G+ GG H H GY G Y
Sbjct: 49 DQKWGGGYHHGGGYGYGGGYGGGYGRPAYGGGYGGGYGHPGYGGGYGHPGYGDGYGGGYG 108
Query: 310 ARYYDGRISNDHG 272
+ Y G HG
Sbjct: 109 SGYGGGYGHPGHG 121
>06_02_0125 + 12122812-12122911,12123647-12123993
Length = 148
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = -1
Query: 466 DEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARY 302
D+ W H G + G G + + G+ GG + H GY G Y Y
Sbjct: 50 DQKWGGAHGGGYGYGGGYGGGGYGHPGYGGGYGGG--YGHPGYGGGYGGGYGQGY 102
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 451 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD 350
R H+ R SH H H+ H T + R H+ HD
Sbjct: 694 RAHSHRHSHHHDAHKRHKTELAGHRRHHVLHIHD 727
>02_05_1332 + 35758657-35758728,35758959-35760689
Length = 600
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = -1
Query: 421 HGGHQGHVTNVHWARGHNGGVSHDHRG-YTRS-LGNNYRARYYDGRISNDHGRNSRLFST 248
H G N+ GH+ G+ HD +G Y S + NYR G ++G F
Sbjct: 141 HNGKTAQKQNLTNRAGHSSGIIHDKKGSYMPSGVTKNYRPPPSTGDDLAENGVEMGEFVR 200
Query: 247 FDCSGSTLSTGVA 209
GS + TG A
Sbjct: 201 EPSPGSDVLTGGA 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,915,995
Number of Sequences: 37544
Number of extensions: 211927
Number of successful extensions: 892
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -