Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0570
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55) 32 0.36
SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5) 31 1.1
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 30 1.5
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 30 1.9
SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05) 29 2.5
SB_56781| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32) 28 5.9
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 28 5.9
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 28 5.9
SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96) 28 5.9
SB_11359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_9681| Best HMM Match : IncA (HMM E-Value=0.58) 28 7.7
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3) 28 7.7
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9) 28 7.7
SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9) 28 7.7
>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
Length = 910
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 421 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 311
+G HQGH+ N +GH G V +++H TRS G Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814
>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
Length = 442
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +3
Query: 108 EAPIVPSPVHVGPLVPGQLTPLVHILININDAASATPVESVEPEQSNVE 254
+ PI P P + + G L +++++ND +A PVE+V+ +Q++ +
Sbjct: 348 KGPISPDPA-IMEEIDGLSNTLDDLILSLNDVDTAEPVENVDIDQADAD 395
>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Frame = -1
Query: 454 ARGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 287
+R +G DHGG H G + R +GG DH G R G R GR
Sbjct: 2 SRRDHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGR- 60
Query: 286 SNDHGRNSR 260
DHG R
Sbjct: 61 --DHGGTGR 67
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Frame = -1
Query: 466 DEHWARGHNGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYY 299
D R +G DHGG + G H G + GG DH G R G R
Sbjct: 5 DHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGG 64
Query: 298 DGRISNDHGRNSR 260
GR DHG R
Sbjct: 65 TGR---DHGGTGR 74
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Frame = -1
Query: 451 RGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 284
R H G DHGG H G + R +GG DH G R G R G
Sbjct: 60 RDHGG-TGRDHGGTGRDHGGTRRDHDGTRRDHGGTRRDHGGTRRDHGGTRRDH---GGTR 115
Query: 283 NDHGRNSR 260
DHG R
Sbjct: 116 RDHGGTRR 123
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = -1
Query: 448 GHNGRVSHDHGGHQ----GHVTNVHWARGHNGGVSHDHRGYTR-SLGNNYRARYYDGRIS 284
GH+ SH++ GH GH H N G SH H G++ + G+++ + S
Sbjct: 310 GHSHGHSHENHGHSHENHGHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHS 369
Query: 283 NDHGRNSRLFSTFDCSGSTL 224
++H L+ D +L
Sbjct: 370 HEHEPKQDLYHHEDFDSYSL 389
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -1
Query: 421 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 266
HG GH H N G SH++ G++ N+ + + G ++HG +
Sbjct: 309 HGHSHGHSHENHGHSHENHGHSHENHGHSHE--NHGHSHKHHGHSHDNHGHS 358
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = -1
Query: 466 DEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 287
D+ R H+ R H HGG G+ + GH GG H H G G+ + DG
Sbjct: 118 DDCDGRSHSHR--HAHGGGPGYGGDYGGGLGHCGGPGHGH-GPGHGHGHGAGLVHGDGGP 174
Query: 286 SNDHG 272
HG
Sbjct: 175 GPGHG 179
>SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)
Length = 331
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 453 AQCSSVTCPSCPPWSWLTPHCG 518
A C CP+CP + PHCG
Sbjct: 117 ASCHCEPCPTCPIGKGVYPHCG 138
>SB_56781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 29.1 bits (62), Expect = 3.4
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 7/132 (5%)
Frame = -1
Query: 454 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 275
+RG+ G GG +G+ G G++ RGYTR R + +
Sbjct: 17 SRGYTGGTRGYTGGTRGYTGGTRGYTGGTRGLTRGTRGYTRGTRGFTGGTRGFTRGTRGY 76
Query: 274 GRNSRLFS---TFDCSGSTLSTGVALAASLMLIRMWTRGVS--CPGTRGPTWTGDGTMGA 110
R +R ++ T G T T + R +TRG GTRG T G G
Sbjct: 77 TRGTRRYTGGYTRGTRGYTRGTRGYTGGT----RGYTRGTRRYTGGTRGYTGGTRGYTGG 132
Query: 109 STRA--GPTSGL 80
TR G T+G+
Sbjct: 133 YTRGTRGYTNGI 144
>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = -1
Query: 442 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNS 263
+G SHD G H + + GH+G SHD G+ N G I D +
Sbjct: 5 DGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGFYNVYYNGDPKSSVTGHIRPDGTFDG 64
Query: 262 RLFS 251
FS
Sbjct: 65 SFFS 68
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -1
Query: 427 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRLFST 248
HD G H + + +G SH H G G + YY+G + + R T
Sbjct: 2 HDDDGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGFYNVYYNGDPKSSVTGHIRPDGT 61
Query: 247 FDCSGSTLSTG 215
FD GS S G
Sbjct: 62 FD--GSFFSAG 70
>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1265
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = -1
Query: 430 SHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRLFS 251
S H H+G VTN ++ DHRG RS ++Y + + R ++ HG R S
Sbjct: 831 SDSHRDHRGVVTNDRYSYYGRSDYQRDHRGLRRS--DSY-PKAQNNR-NSTHGGKGRFAS 886
Query: 250 TFDCSGSTLSTGVALAASLM 191
+ LS+ V+ +S++
Sbjct: 887 AKAKTSVKLSSVVSKVSSVI 906
>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 454 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 314
A GH ++H H H A H G++H H T+ L ++Y
Sbjct: 214 AHGHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSH---TKGLAHSY 257
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 442 NGRVSHDHGG--HQGHVTNVHWARGHNGGVSHDHRGYTR 332
+GR++ GG H+++ RG GGVS H G+ R
Sbjct: 1059 HGRLTRGDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097
>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
Length = 339
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT-GETAGFFQH 247
G+G +++G + G L A + G+G + AG+ +++ G T+ +H
Sbjct: 202 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVVSRGFTSKVAKH 248
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -1
Query: 427 HDHGGHQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 260
H HGG + T+ H + H+ H HR + + + GR ++DH R
Sbjct: 417 HGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHEMR 473
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 162 LTPLVHILININDAASATPVESVEPEQSNVEK 257
LT H+LIN+ND PV S QS V++
Sbjct: 597 LTDTSHLLINVNDINDNPPVFSPSAYQSRVKE 628
>SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96)
Length = 209
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT-GETAGFFQH 247
G+G +++G + G L A + G+G + AG+ +++ G T+ +H
Sbjct: 94 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGIVSRGLTSKVAKH 140
>SB_11359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -1
Query: 373 HNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRLFSTFDCSGSTLSTGVALAAS 197
H+G V HD T G AR+Y+ ++ HGR +L+ T G L V A++
Sbjct: 120 HHGTVRHDTVKNTEHHGT---ARHYNDNGTSWHGRRRQLYLTCIQQGKILGFEVGAAST 175
>SB_9681| Best HMM Match : IncA (HMM E-Value=0.58)
Length = 215
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT-GETAGFFQH 247
G+G +++G + G L A + G+G + AG+ +++ G T +H
Sbjct: 78 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVVSRGLTTKVSKH 124
>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
Length = 861
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = -1
Query: 454 ARGHNGRVSHDHGG---HQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 287
+RG+ G + +GG H G T + H GG + + G+TR G+ R+Y G
Sbjct: 328 SRGNTGGFTRHYGGFTRHYGGFTRHYGVFTRHYGGFTRHYGGFTRHYGD--FTRHYGG-F 384
Query: 286 SNDHGRNSRLFSTF 245
+ +G +R + F
Sbjct: 385 TRHYGGFTRHYGGF 398
>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
Length = 125
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 427 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 335
HD+GGH H+ GH+ G+ HD+ G+T
Sbjct: 83 HDYGGHD------HYDGGHHDGMHHDY-GHT 106
>SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9)
Length = 227
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT-GETAGFFQH 247
G+G +++G + G L A + G+G + AG+ +++ G T+ +H
Sbjct: 67 GVGVSLSGIRVLIGGPLAGVAGLVGVGVVGAGAGVVSRGLTSKVAKH 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,996,314
Number of Sequences: 59808
Number of extensions: 227926
Number of successful extensions: 896
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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