Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0569
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 29 0.73
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 28 0.97
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 27 1.7
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 27 2.2
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 27 3.0
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 3.9
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 26 5.2
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 6.8
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 25 6.8
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.0
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 28.7 bits (61), Expect = 0.73
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 446 QCFKCCRYGHVKDMCRSN 499
+C+KC R GH+ CR+N
Sbjct: 84 ECYKCGRVGHIARDCRTN 101
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 28.3 bits (60), Expect = 0.97
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Frame = +1
Query: 493 IKSSLLKCGKDGHFGSSCT-------SEDEAFC-CICHSSHYATNKICKEFF 624
++ C D HFG CT E AFC C S + A+N KEFF
Sbjct: 185 VRKFCYNCASDEHFGDDCTLPSRSNYPESTAFCEANCPSGNDASN---KEFF 233
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 45 KNILNGSLKRIGRNRLSLIFTNSSDANNFTS 137
KN + GSLK + LSLI + SDA + T+
Sbjct: 328 KNCIEGSLKYLENQFLSLIDLHLSDAGHITT 358
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 260 VPPGCGSVLKARRLKKKTFIDNKTSFIDTETVVL 361
+PPGC AR LK KT F + +L
Sbjct: 428 IPPGCPPQYVARSLKSSKSASLKTGFFPNDVYIL 461
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 446 QCFKCCRYGHVKDMCRSNPRCL 511
+CF C GH+ C NP+ L
Sbjct: 125 KCFICHENGHLSGQCEQNPKGL 146
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 73 ELAEIGSLLYLRILQTLIILPATLGFRITGSKPLFHHLMFL 195
EL E + Y + +I L A L + G LFHHLMFL
Sbjct: 117 ELLEFEASEYSLLFILIIALDALLTVSLFG---LFHHLMFL 154
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 278 YHNLEEQKILNHLFCRPFFGNPSHNTHLRN 189
Y + + +K+LNHLF F G+ + R+
Sbjct: 402 YSSTDPKKLLNHLFYTAFMGSEHSSKETRS 431
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 221 QRMVYRRGDSEFSVPPGCGSVLKARRLKKKTFIDNKTSFIDTETVVLTFD 370
+R + R G SE+ + G+V+ +R + D+ ID +LT D
Sbjct: 191 ERTIRREGSSEYRLRSFNGTVISTKRDELDNICDHMGLQIDNPMNILTQD 240
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 263 PPGCGSVLKARRLKKKTFIDNKTSFIDTETVVLT 364
PPGCG + A+ L K+ ++ +FI+ +LT
Sbjct: 133 PPGCGKTMLAKALAKQ----SQATFINVSVGLLT 162
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 108 NSSDANNFTSDTRLSNNRFKAFIPSFNVSQMGIVRGIPKEWSTEEVIQ 251
NSSD +R + K IPS + + R IPK+W +V++
Sbjct: 160 NSSDEYLPPQSSRRDVSSEKPSIPSISFINIRSWRTIPKKWCVLQVLR 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,203
Number of Sequences: 5004
Number of extensions: 58789
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -