Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0569
         (631 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M14954-1|AAA70221.1|  426|Drosophila melanogaster putative ORF1 ...    49   6e-06
AJ302712-1|CAC16870.1|  433|Drosophila melanogaster gag protein.       39   0.005
AJ635224-1|CAG25619.1|  951|Drosophila melanogaster gag protein ...    33   0.32 
X68130-1|CAA48237.1|  943|Drosophila melanogaster protein ( D.me...    33   0.42 
U06920-1|AAC17188.3|  921|Drosophila melanogaster probable gag p...    33   0.42 
X68816-2|CAA48714.1|  536|Drosophila melanogaster T-element prot...    32   0.56 
S56442-2|AAA14198.2|  536|Drosophila melanogaster Orf2 protein.        32   0.56 
AJ542581-1|CAD65868.3|  965|Drosophila melanogaster gag protein ...    32   0.74 
AE013599-1071|AAF58809.3| 1350|Drosophila melanogaster CG12908-P...    31   0.97 
AE013599-1070|AAS64880.1| 1370|Drosophila melanogaster CG12908-P...    31   0.97 
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl...    30   2.2  
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ...    30   2.2  
AY561850-1|AAS68533.1|  970|Drosophila melanogaster gag protein ...    30   2.2  
AY035777-1|AAK77970.1|  257|Drosophila melanogaster gag protein ...    30   2.2  
AJ566116-1|CAD92792.1|  970|Drosophila melanogaster gag protein ...    30   2.2  
M17214-1|AAA28507.1|  122|Drosophila melanogaster protein ( D.me...    29   6.9  
M38643-1|AAA28939.1|  549|Drosophila melanogaster protein ( D.me...    28   9.1  
M22874-1|AAA28674.1|  583|Drosophila melanogaster nucleic acid-b...    28   9.1  

>M14954-1|AAA70221.1|  426|Drosophila melanogaster putative ORF1
           protein.
          Length = 426

 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 20/64 (31%), Positives = 37/64 (57%)
 Frame = +2

Query: 323 NKTSFIDTETVVLTFDGQILPKRIFICFNSFPVDLYIFPTIQCFKCCRYGHVKDMCRSNP 502
           N  + ++T  +++TF+   LP+ + I + +  V  YI   ++C KC R+GH   +C+S  
Sbjct: 146 NNITLVETGLIIITFESHKLPEIVRIGYETVRVRDYIPLPLRCKKCLRFGHPTPICKSVE 205

Query: 503 RCLN 514
            C+N
Sbjct: 206 TCIN 209


>AJ302712-1|CAC16870.1|  433|Drosophila melanogaster gag protein.
          Length = 433

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +2

Query: 353 VVLTFDGQILPKRIFICFNSFPVDLYIFPTIQCFKCCRYGHVKDMCRSNPRCLN 514
           V++TFD   LP ++ + +++  V  YI   ++C  C   GH    C++ P C++
Sbjct: 172 VLVTFDRFTLPSKLTVSWHTVKVSEYIPNPMRCKSCQLLGHTSKHCKNPPACVS 225


>AJ635224-1|CAG25619.1|  951|Drosophila melanogaster gag protein
           protein.
          Length = 951

 Score = 33.1 bits (72), Expect = 0.32
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 443 IQCFKCCRYGHVKDMCRSNPRCLNVA 520
           +QC++C  + H K+ C   PRC+  A
Sbjct: 654 VQCYRCQGFRHAKNSCMKPPRCMKCA 679


>X68130-1|CAA48237.1|  943|Drosophila melanogaster protein (
           D.melanogaster DNA sequenceof Het-A transposable element
           9D4. ).
          Length = 943

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 443 IQCFKCCRYGHVKDMCRSNPRCLNVA 520
           +QC++C  + H K+ C   PRC+  A
Sbjct: 646 VQCYRCQGFRHAKNSCMRPPRCMKCA 671


>U06920-1|AAC17188.3|  921|Drosophila melanogaster probable gag
           protein protein.
          Length = 921

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 443 IQCFKCCRYGHVKDMCRSNPRCLNVA 520
           +QC++C  + H K+ C   PRC+  A
Sbjct: 624 VQCYRCQGFRHAKNSCMRPPRCMKCA 649


>X68816-2|CAA48714.1|  536|Drosophila melanogaster T-element
           protein.
          Length = 536

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 443 IQCFKCCRYGHVKDMCRSNPRCLNVA 520
           +QC++C  + H K+ C   PRC+  A
Sbjct: 239 VQCYRCQGFRHAKNSCMRPPRCMKSA 264


>S56442-2|AAA14198.2|  536|Drosophila melanogaster Orf2 protein.
          Length = 536

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 443 IQCFKCCRYGHVKDMCRSNPRCLNVA 520
           +QC++C  + H K+ C   PRC+  A
Sbjct: 239 VQCYRCQGFRHAKNSCMRPPRCMKSA 264


>AJ542581-1|CAD65868.3|  965|Drosophila melanogaster gag protein
           protein.
          Length = 965

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 443 IQCFKCCRYGHVKDMCRSNPRCLNVA 520
           +QC++C  + H K+ C   PRC+  A
Sbjct: 661 VQCYRCQGFRHSKNSCMRPPRCMKCA 686


>AE013599-1071|AAF58809.3| 1350|Drosophila melanogaster CG12908-PA,
           isoform A protein.
          Length = 1350

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 529 HFGSSCTSEDEAFCCICHSSHYATNKIC 612
           H  + C  + E +CC+C S  Y   K C
Sbjct: 293 HEKAECHDKAEGYCCVCGSGFYGNGKSC 320


>AE013599-1070|AAS64880.1| 1370|Drosophila melanogaster CG12908-PB,
           isoform B protein.
          Length = 1370

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 529 HFGSSCTSEDEAFCCICHSSHYATNKIC 612
           H  + C  + E +CC+C S  Y   K C
Sbjct: 293 HEKAECHDKAEGYCCVCGSGFYGNGKSC 320


>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
           single-stranded nucleicacid binding protein protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 437 PTIQCFKCCRYGHVKDMCRSNPRCLNVARM 526
           PT QC +C  +GH K+ CR+  +C+   ++
Sbjct: 792 PT-QCHRCQCFGHTKNYCRNPFKCMKCGQL 820


>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
           protein.
          Length = 1047

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 437 PTIQCFKCCRYGHVKDMCRSNPRCLNVARM 526
           PT QC +C  +GH K+ CR+  +C+   ++
Sbjct: 792 PT-QCHRCQCFGHTKNYCRNPFKCMKCGQL 820


>AY561850-1|AAS68533.1|  970|Drosophila melanogaster gag protein
           protein.
          Length = 970

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 437 PTIQCFKCCRYGHVKDMCRSNPRCLNVARM 526
           PT QC +C  +GH K+ CR+  +C+   ++
Sbjct: 715 PT-QCHRCQCFGHTKNYCRNPFKCMKCGQL 743


>AY035777-1|AAK77970.1|  257|Drosophila melanogaster gag protein
           protein.
          Length = 257

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 437 PTIQCFKCCRYGHVKDMCRSNPRCLNVARM 526
           PT QC +C  +GH K+ CR+  +C+   ++
Sbjct: 2   PT-QCHRCQCFGHTKNYCRNPFKCMKCGQL 30


>AJ566116-1|CAD92792.1|  970|Drosophila melanogaster gag protein
           protein.
          Length = 970

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 437 PTIQCFKCCRYGHVKDMCRSNPRCLNVARM 526
           PT QC +C  +GH K+ CR+  +C+   ++
Sbjct: 715 PT-QCHRCQCFGHTKNYCRNPFKCMKCGQL 743


>M17214-1|AAA28507.1|  122|Drosophila melanogaster protein (
           D.melanogaster Fw repetitiveelement putative reverse
           transcriptase, complete cds,and putative binding
           protein, 3' end. ).
          Length = 122

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 443 IQCFKCCRYGHVKDMCRSNPRCL 511
           +QC  C  YGH +  C   P C+
Sbjct: 38  VQCTNCQEYGHTRSYCTLAPVCV 60


>M38643-1|AAA28939.1|  549|Drosophila melanogaster protein (
           D.melanogaster mobileelement jockey gag-specific protein
           gene, complete cds.).
          Length = 549

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 443 IQCFKCCRYGHVKDMCRSNPRC 508
           +QC +C  +GH K+ C  +P C
Sbjct: 369 LQCQRCQIFGHSKNYCAQDPIC 390


>M22874-1|AAA28674.1|  583|Drosophila melanogaster nucleic
           acid-binding protiein protein.
          Length = 583

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 443 IQCFKCCRYGHVKDMCRSNPRC 508
           +QC +C  +GH K+ C  +P C
Sbjct: 403 LQCQRCQIFGHSKNYCAQDPIC 424


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,401,898
Number of Sequences: 53049
Number of extensions: 570002
Number of successful extensions: 1410
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)