Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0569
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45420.1 68418.m05581 myb family transcription factor contain...    31   0.63 
At1g68400.1 68414.m07814 leucine-rich repeat transmembrane prote...    31   0.63 
At1g26330.1 68414.m03211 hypothetical protein                          30   1.1  
At4g11580.1 68417.m01856 F-box family protein predicted protein,...    29   3.4  
At1g47920.1 68414.m05337 syntaxin-related family protein contain...    29   3.4  
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c...    28   4.4  
At3g57830.1 68416.m06447 leucine-rich repeat transmembrane prote...    28   4.4  
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    28   4.4  
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c...    28   5.9  
At5g28180.1 68418.m03411 kelch repeat-containing F-box family pr...    27   7.8  
At1g14680.1 68414.m01746 hypothetical protein                          27   7.8  

>At5g45420.1 68418.m05581 myb family transcription factor contains
           Pfam profile: PF00249 Myb DNA binding domain
          Length = 309

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -2

Query: 372 PSKVRTTVSVSIKLVLLSMNVFFFSRLAFKTL 277
           P+K+  ++SVSI L++LS++ F+F     K+L
Sbjct: 32  PNKLFISISVSISLIILSLSFFYFESEPAKSL 63


>At1g68400.1 68414.m07814 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAA33715
           from [Petunia integrifolia]
          Length = 670

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
 Frame = +3

Query: 24  FLKNNSFKNILNGSLKRIGR-NRLSLIFTNSS-----DANNFTS--DTRLSNNRFKAFIP 179
           FL NN F      S+  + R  RL L F N S     D  + T     RL +NRF   IP
Sbjct: 120 FLSNNQFSGNFPTSITSLTRLYRLDLSFNNFSGQIPPDLTDLTHLLTLRLESNRFSGQIP 179

Query: 180 SFNVSQM 200
           + N+S +
Sbjct: 180 NINLSDL 186


>At1g26330.1 68414.m03211 hypothetical protein
          Length = 1196

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -1

Query: 493 STHILDMPISTTFKTLYS--RENIQVY-RKRIKTYENSFRKNLAIKSQDNC 350
           ST     P+ TT     S  +EN +VY RKR+ T ++   +NL+ +S+++C
Sbjct: 581 STEGNGFPVDTTPTEACSVKKENHKVYIRKRVSTNQHRINRNLSSESKNSC 631


>At4g11580.1 68417.m01856 F-box family protein predicted protein,
           Caenorhabditis elegans, PIR2:S44609 ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 333

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +3

Query: 429 IFSLLYNVLNVVD--MGMSRICVDQILAA 509
           I  L++N L+V+D  MG SR+C+   LA+
Sbjct: 21  ILELIFNKLDVMDITMGASRVCISWFLAS 49


>At1g47920.1 68414.m05337 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis;
          Length = 379

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +2

Query: 245 DSEFSVPPGCGSVLKARRLKKKTFIDNKTSFIDTETVVLTFDGQILPKRIFICFNSFPVD 424
           D++   PP CGSV+K+  +K+   + N  +  D+      F+    P  +++ ++S+  +
Sbjct: 82  DADHDCPPCCGSVVKSASIKRLVVLVNLPNKRDSHDYAY-FEA---PSLVYLDYSSYVYE 137

Query: 425 LY 430
            Y
Sbjct: 138 TY 139


>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 299

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 511 KCGKDGHFGSSCTS 552
           KCGK+GHF   C+S
Sbjct: 284 KCGKEGHFARECSS 297


>At3g57830.1 68416.m06447 leucine-rich repeat transmembrane protein
           kinase, putative several receptor-like protein kinases
          Length = 662

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 48  NILNGSLKRIGRNRLSLIFTNSSDANNFTSDTRLSNNRFKAFIPSFNVSQMGIVRGIPK 224
           N+LNGSL +      SL+ T +   N+F+ +   S  RF  F+ S ++    +   IP+
Sbjct: 150 NLLNGSLPQSLTQLGSLVGTLNLSYNSFSGEIPPSYGRFPVFV-SLDLGHNNLTGKIPQ 207


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 511 KCGKDGHFGSSCTSE 555
           KCGK GHF   C SE
Sbjct: 122 KCGKPGHFARECPSE 136


>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 301

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 514 CGKDGHFGSSCTS 552
           CGK+GHF   CTS
Sbjct: 287 CGKEGHFARECTS 299


>At5g28180.1 68418.m03411 kelch repeat-containing F-box family
           protein contains Pfam PF01344: Kelch motif; contains
           Pfam PF00646: F-box domain
          Length = 352

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 469 ISTTFKTLYSRENIQVYRKRIKTYENSFRKNLAIKSQDN 353
           +  TF+TL     + V R ++KTYE+ F   L    + N
Sbjct: 63  VCKTFRTLLISNELTVARVQLKTYESFFHVCLKFPDKPN 101


>At1g14680.1 68414.m01746 hypothetical protein
          Length = 290

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 247 ITSSVDHSLGIPLTIPI*E-TLNDGIKALNLLFESLVSLVKLLASEEFV 104
           I  ++DHSLG+P+++ + +  L    ++   L E  +SLV  L  +E V
Sbjct: 11  IKETIDHSLGLPISMDVLQKKLYTAEESQRRLREQYLSLVSRLKEKEKV 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,658,060
Number of Sequences: 28952
Number of extensions: 286551
Number of successful extensions: 846
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)