Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0567
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.3  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   7.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 145 HFMFLLQVYYFI 180
           H +FLL +YYF+
Sbjct: 126 HLLFLLCIYYFV 137



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 368 HYCSCCAWLYFNFINYSTRIFYQCID 291
           H   CCA+++FN       +F  C+D
Sbjct: 179 HLLFCCAFIFFNM----HLLFLLCLD 200



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 145 HFMFLLQVYYF 177
           H +FLL +YYF
Sbjct: 278 HLLFLLCIYYF 288


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 426 SPSDDTSNLPKQSTFSPLPTH 488
           SPS   S+LP Q T +  PT+
Sbjct: 76  SPSSTPSSLPTQRTSTSNPTY 96


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 163 QVYYFINKMKLSMYMSQK 216
           ++YY + K KLS++   K
Sbjct: 167 RIYYKLTKKKLSVFFGNK 184


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,019
Number of Sequences: 336
Number of extensions: 3425
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)