Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0567
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    29   0.68 
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.6  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   3.6  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    26   4.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   8.4  

>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 183 QNEIKYVYVAEGLTSSFSFDIVDVSGRIRATIFFCYVDTLVE 308
           ++E+K+ +   G    FS +++D SG IRAT F   VD   +
Sbjct: 201 KSEVKHWHNQRGEGKLFSVNLLDESGEIRATGFNDQVDAFYD 242


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +2

Query: 338 NITTRSMNNNDSSVTSFTLPK*GNGSASFK 427
           N++T S+ NN S+V+++T+   G  S++FK
Sbjct: 220 NMSTVSVTNNGSAVSNYTVNTNGWTSSNFK 249


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 396 LSKATEVLRLSPSDDTSNLPKQST 467
           L+ AT  +RL+PSD  +N+P   T
Sbjct: 99  LNSATSNIRLTPSDTYNNIPVSDT 122


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 719 RAIVLHRALRQPGEPFTP 666
           RA++L +   QP EPF+P
Sbjct: 144 RAVILRKHTSQPNEPFSP 161


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 722 SRAIVLHRALRQPGEPFTPVRPDLAR 645
           +R +VLH  L      FTP+ PDL+R
Sbjct: 649 TRRVVLHALLGLTITRFTPLWPDLSR 674


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,475
Number of Sequences: 5004
Number of extensions: 53142
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)