Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0567
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_16396| Best HMM Match : 7tm_1 (HMM E-Value=0.017)                   29   3.9  
SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)                    29   5.1  

>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 541  GLDGPQMFEAHRGQG*YLGPYPLNDSPALSPKCPILARSGRTGVKGSPG 687
            GL GP  F+   G+   +G      +P +     +   SGR G+ GSPG
Sbjct: 971  GLSGPPGFDGQAGETGAIGFKGEPGTPGIPGFPGLTGSSGRDGLDGSPG 1019


>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1627

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 406 ALLRKSERRHGTVIIVHA 353
           AL ++ ERRHGTV++ HA
Sbjct: 613 ALFKRLERRHGTVLVRHA 630


>SB_16396| Best HMM Match : 7tm_1 (HMM E-Value=0.017)
          Length = 274

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -3

Query: 384 DVTELSLLFMLRVVIF*FHKLFYTYLLPVYRHNKKKLLHEYVHSRPLCQKKMKTSAL 214
           DVT   LL M+    F  + + Y+Y +P +R     ++  YV+    C+K++ T +L
Sbjct: 146 DVTNF-LLMMMNANSF-INVVVYSYKIPEFRQQFNAVISNYVYCCCHCRKRVATVSL 200


>SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +1

Query: 541 GLDGPQMFEAHRGQG*YLGPYPLNDSPALSPKCPILARSGRTGVKGSPG 687
           G+DGP   E  RGQ    GP  +   P L+        SGR G +G PG
Sbjct: 10  GIDGP---EGERGQQ---GPIGMTGPPGLAGGVGANGPSGRGGSQGPPG 52


>SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 380 SRNCHYCSCCAWLYFNFINYSTRIFYQCI 294
           S  CH+  C  W  FN ++ ST    +CI
Sbjct: 32  SMPCHHLLCALWDAFNGVSSSTMCITECI 60


>SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)
          Length = 331

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 380 SRNCHYCSCCAWLYFNFINYSTRIFYQCI 294
           S  CH+  C  W  FN ++ ST    +CI
Sbjct: 32  SMPCHHLLCALWDAFNGVSSSTMCITECI 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,938,115
Number of Sequences: 59808
Number of extensions: 427207
Number of successful extensions: 917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)