Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0567
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.9  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   6.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.0  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +3

Query: 204 YVAEGLTSSFSFDIVDVSGRIR---ATIF-FCY 290
           +V EG  +S SFD +  +  IR   ATIF F Y
Sbjct: 188 FVPEGFLTSCSFDYLTDTNEIRIFVATIFTFSY 220


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 314 RIFYQCIDITKKNCCTNTS 258
           R+   C DIT+ N C  +S
Sbjct: 98  RLVNNCKDITESNSCKKSS 116


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 163 QVYYFINKMKLSMYMSQK 216
           Q+YYF++K  ++ Y  ++
Sbjct: 259 QLYYFLHKQLMTRYFLER 276


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 163 QVYYFINKMKLSMYMSQK 216
           Q+YYF++K  ++ Y  ++
Sbjct: 259 QLYYFLHKQLMTRYFLER 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,270
Number of Sequences: 438
Number of extensions: 3928
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)