Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0567
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29560.1 68414.m03615 expressed protein ; expression supporte...    28   7.3  
At1g01360.1 68414.m00051 expressed protein similar to hypothetic...    28   7.3  

>At1g29560.1 68414.m03615 expressed protein ; expression supported
           by MPSS
          Length = 521

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 492 ISE*ARGKRCSASADSRYHRSGLNEALPLPYLGRVKDVTE 373
           +S+  +G      ADS Y RS  +  + LP   R+KDV E
Sbjct: 82  LSDSGKGSDEIQKADSVYKRSNADTRVSLPQQRRLKDVVE 121


>At1g01360.1 68414.m00051 expressed protein similar to hypothetical
           protein GB:CAB45785 GI:5262156 from [Arabidopsis
           thaliana]
          Length = 187

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 258 HSRPLCQKKMKTSALLRHIHT*FHFVNKIV 169
           H + LC++   TSAL++HI    H V  +V
Sbjct: 24  HHQHLCRENQCTSALVKHIKAPLHLVWSLV 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,979
Number of Sequences: 28952
Number of extensions: 277565
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)