Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0565
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573 31 0.73
03_02_0564 - 9477118-9477200,9477617-9477687,9477799-9477944,947... 31 0.96
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 29 2.2
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 29 2.2
04_04_0058 - 22416949-22418196 29 2.2
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 29 2.9
11_06_0156 + 20748472-20748951 29 3.9
10_02_0061 - 4812903-4812940,4813140-4813536 29 3.9
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987... 28 6.8
07_03_0874 - 22202699-22203070,22204239-22204874 28 6.8
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 27 8.9
>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
Length = 409
Score = 31.1 bits (67), Expect = 0.73
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 442 NHKHVGFTNNIQRINLASGSNNLLVLGPGLPASEGPPMLLREPTT 576
N+ ++ NN IN S SNNLL+ +S PP+ L TT
Sbjct: 198 NNSNISSNNNNNNINSISNSNNLLITS----SSSSPPLFLPFSTT 238
>03_02_0564 -
9477118-9477200,9477617-9477687,9477799-9477944,
9478051-9478128,9478284-9478388,9478647-9478769,
9479085-9479171,9479272-9479352,9479443-9479512,
9479604-9479662,9479763-9479831,9479912-9479962,
9480063-9480107,9480203-9480276,9480544-9480667,
9480773-9480940
Length = 477
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 567 LPKQHRRSFRSRQPRPKYQQVVASTG*VDALDVV 466
LP HR SFR+ PRP A+ G + A ++
Sbjct: 15 LPHHHRSSFRTSSPRPSRMVCAAAEGFISAAPIL 48
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 55 QKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPG 156
++ PS T T+ V PGP V D RKPL+ T PG
Sbjct: 182 KEKPSIGTVTA--VGPGPLVEDGSRKPLSIT-PG 212
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 259 SVGTPQMEVLPFVSAITSPARWGLAPAFAAEPPTILV 149
+ P LPF S + + AR G APA +A P LV
Sbjct: 7 AAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>04_04_0058 - 22416949-22418196
Length = 415
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -1
Query: 268 GC--WSVGTPQMEVLPFVSAITSPARWGLAPAFAAEPPTIL 152
GC W + P V+ A SPA W PAF A P+ L
Sbjct: 20 GCSSWPLSPPPPSVILTPFASPSPAPWACPPAFPAPSPSPL 60
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 49 SWQKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPGLWVVLPQTLVLTPI 198
+W K P N V+PG ++DA P +PGL P TL TP+
Sbjct: 36 AW-KRPGNGAAVPVVVAPGSPIMDADSWP---ALPGLASPPPTTLTPTPM 81
>11_06_0156 + 20748472-20748951
Length = 159
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 573 CWLPKQHRRSFRSRQPRPKY 514
CWLP+ RRS R R R K+
Sbjct: 6 CWLPRACRRSMRHRSCRTKF 25
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 31 WRWRPWSW---QKSPSNSTTTSRSVSPGPRVLDAPRKP 135
WRWR W W + ++ST S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>07_03_1583 -
27898375-27898436,27898455-27898539,27898621-27898768,
27899009-27899028,27899135-27899236,27899743-27899812,
27899956-27900012,27902324-27902484,27902742-27902761,
27902997-27903069,27903077-27903169,27903456-27903496,
27903597-27903858
Length = 397
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 272 ERVLVSRNSADGSSAIRQCDHKSSKMGVSTSVCGRTT--HNPGTVEVSGFLGASKTLGPG 99
+R L S+ A+ S+ Q ++ ++ S + T H PG+V S FL A T+G G
Sbjct: 46 QRCLCSQQYAEKQSSGSQQQQQNQQLERLFSNLNQATMKHEPGSVTSSIFLVAGTTVGAG 105
Query: 98 DTDLDVVVEFDG 63
+ V + G
Sbjct: 106 ILAIPAVTQEAG 117
>07_03_0874 - 22202699-22203070,22204239-22204874
Length = 335
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -1
Query: 574 LLAPEAASEVLPKPAAQAQVPAS 506
LLAP AA++V P +QAQ PA+
Sbjct: 14 LLAPSAATDVPSYPLSQAQSPAN 36
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 320 SSPSLLAQLKSSPEAPGSPPP 382
SS S + SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,173,761
Number of Sequences: 37544
Number of extensions: 377986
Number of successful extensions: 1767
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1765
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -