Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0565
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            29   2.3  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_7929| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_36834| Best HMM Match : Rap_GAP (HMM E-Value=0.00045)               28   5.2  
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)                    28   5.2  
SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1)                27   9.1  
SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 388 QMHGSYNMDTLHNDVAIINHKHVGFTNNIQRINLASGSNNLLVL 519
           Q H   N+  ++N+  IIN+ ++   NNI   N+   +NN++++
Sbjct: 384 QQHHHQNI-IINNNNIIINNNNIIINNNINNNNIIINNNNIIII 426


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 82  TSRSVSPGPRVLDAPRKPL 138
           TS    P PRVLD+PRKPL
Sbjct: 379 TSLLAYPTPRVLDSPRKPL 397


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 64   PSNSTTTSRSVSPGPRVLDAPRKPLTSTVPGL 159
            PS STT++  + P P     P KP  ST PG+
Sbjct: 1335 PSPSTTSTTPIKPSPST--TPIKPSPSTTPGV 1364


>SB_7929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 49  SWQKSPSNSTTTSRSVSPG-PRVLDAPRKPLTSTVP 153
           S+ K  SNS T S S SPG P VL+ P    +S  P
Sbjct: 14  SYPKRNSNSHTASNSCSPGDPLVLERPPPRWSSNSP 49


>SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 65  GLFCHDHGRQRHQYCCEDL 9
           G FCH H   R   CC+DL
Sbjct: 601 GSFCHIHPTDRFAVCCKDL 619


>SB_36834| Best HMM Match : Rap_GAP (HMM E-Value=0.00045)
          Length = 545

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 52  WQKSPSN-STTTSRSVSPGPRVLDAPRKPLTSTVPGLWVVLPQTL 183
           + K PS      SR  SP P  L  P  PL +    + ++  QTL
Sbjct: 414 YHKQPSTFEEFASRVFSPAPNTLSRPSTPLGTAAEAMTIMRTQTL 458


>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
          Length = 320

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 275 TERVLVSRNSADGSSAI-RQCDHKSSKMGVSTSVCGRTTHNPGTVEVSGF 129
           TE V V   S   + A  R CD  +S      S    TTH  G  +++GF
Sbjct: 252 TEDVSVQALSGSPTEAANRDCDDSASSTSDKESAPDETTHASGNTKLTGF 301


>SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1)
          Length = 360

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 70  NSTTTSRSVSPGPRVLDAPRKPLTSTVPGLWVVLPQTLVLT 192
           +STT + + +  P+   AP+ P+  T+P +    PQT  +T
Sbjct: 229 SSTTVAPTTTETPKTTKAPKTPI--TIPKITTNRPQTSTIT 267


>SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -3

Query: 209 KSSKMGVSTSVCGRTTHNPGTVEVSGFLGASKTLGPG 99
           KSSK   S+S    TTH P  V  +       T GPG
Sbjct: 61  KSSKSSKSSSTSSSTTHGPTPVPATPSSPPRPTPGPG 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,323,909
Number of Sequences: 59808
Number of extensions: 378313
Number of successful extensions: 1543
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)