Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0565
(616 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 30 1.1
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 30 1.1
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 30 1.1
Z48584-5|CAD57717.1| 501|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z48584-4|CAD57716.1| 536|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z48584-3|CAD57715.1| 524|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z70287-4|CAA94297.1| 299|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 29 3.5
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z99281-31|CAI79273.1| 160|Caenorhabditis elegans Hypothetical p... 27 8.1
Z75953-4|CAJ85747.1| 294|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z75953-3|CAB00100.1| 611|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF166171-1|AAD49860.1| 611|Caenorhabditis elegans adducin-head-... 27 8.1
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 27 8.1
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 421 HNDVAIINHKHVGFTNNIQRINLASGSNNLLV 516
HN++A+ N + + ++ +QRINL NN+ +
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENNVRI 234
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 421 HNDVAIINHKHVGFTNNIQRINLASGSNNLLV 516
HN++A+ N + + ++ +QRINL NN+ +
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENNVRI 860
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 421 HNDVAIINHKHVGFTNNIQRINLASGSNNLLV 516
HN++A+ N + + ++ +QRINL NN+ +
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENNVRI 860
>Z48584-5|CAD57717.1| 501|Caenorhabditis elegans Hypothetical
protein ZK1321.2d protein.
Length = 501
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 468 QHPAHQPSQWKQQLAGTWAWAAGFGRTSDAASGANNQQK 584
Q P+ QPS +QLA + +A FGR ++ ASG + + K
Sbjct: 27 QRPSRQPSP-VEQLAPIRSHSADFGRAAEMASGNSEEGK 64
>Z48584-4|CAD57716.1| 536|Caenorhabditis elegans Hypothetical
protein ZK1321.2c protein.
Length = 536
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 468 QHPAHQPSQWKQQLAGTWAWAAGFGRTSDAASGANNQQK 584
Q P+ QPS +QLA + +A FGR ++ ASG + + K
Sbjct: 62 QRPSRQPSP-VEQLAPIRSHSADFGRAAEMASGNSEEGK 99
>Z48584-3|CAD57715.1| 524|Caenorhabditis elegans Hypothetical
protein ZK1321.2b protein.
Length = 524
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 468 QHPAHQPSQWKQQLAGTWAWAAGFGRTSDAASGANNQQK 584
Q P+ QPS +QLA + +A FGR ++ ASG + + K
Sbjct: 62 QRPSRQPSP-VEQLAPIRSHSADFGRAAEMASGNSEEGK 99
>Z70287-4|CAA94297.1| 299|Caenorhabditis elegans Hypothetical
protein R09E10.6 protein.
Length = 299
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 55 QKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPGLWVVL 171
++ PS + T ++ P V+D+P P+TS+ GL VL
Sbjct: 157 RQQPSKNVETMTAIEP-VEVMDSPTSPVTSSNSGLITVL 194
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 34 RWRPWSWQKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPG 156
R RP + +++ + +TTT SVS P++ D P +V G
Sbjct: 259 RGRPSNKRQTTTTTTTTITSVSKSPQISDTNTLPTLPSVTG 299
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 70 NSTTTSRSVSPGPRVLDAPRKPLTSTVP 153
+S TT + +P P+ L +PR P TS P
Sbjct: 447 SSATTLTAQAPPPQALTSPRTPSTSASP 474
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 70 NSTTTSRSVSPGPRVLDAPRKPLTSTVP 153
+S TT + +P P+ L +PR P TS P
Sbjct: 508 SSATTLTAQAPPPQALTSPRTPSTSASP 535
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 70 NSTTTSRSVSPGPRVLDAPRKPLTSTVP 153
+S TT + +P P+ L +PR P TS P
Sbjct: 472 SSATTLTAQAPPPQALTSPRTPSTSASP 499
>Z99281-31|CAI79273.1| 160|Caenorhabditis elegans Hypothetical
protein Y57G11C.51 protein.
Length = 160
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 34 RWRPWSWQKSPSNSTTTSRSVSPGPRVLDAPRKPLTST 147
RW P +PS+ST++S S SP + PLTST
Sbjct: 117 RWSPQPDPSTPSSSTSSSTSSSP-----SSSSTPLTST 149
>Z75953-4|CAJ85747.1| 294|Caenorhabditis elegans Hypothetical
protein F57F5.4b protein.
Length = 294
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 138 DFDGTRIVGGSAANAGANPHLAGLVI--ALTNGRTSICGVPTDQHP 269
D DGT I GGS N G N AG V+ A+ NGR + V HP
Sbjct: 96 DLDGTVIDGGST-NFGVNQ--AGYVLHSAIHNGRPEVKCVVHLHHP 138
>Z75953-3|CAB00100.1| 611|Caenorhabditis elegans Hypothetical
protein F57F5.4a protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 138 DFDGTRIVGGSAANAGANPHLAGLVI--ALTNGRTSICGVPTDQHP 269
D DGT I GGS N G N AG V+ A+ NGR + V HP
Sbjct: 413 DLDGTVIDGGST-NFGVNQ--AGYVLHSAIHNGRPEVKCVVHLHHP 455
>AF166171-1|AAD49860.1| 611|Caenorhabditis elegans
adducin-head-domain-related protein protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 138 DFDGTRIVGGSAANAGANPHLAGLVI--ALTNGRTSICGVPTDQHP 269
D DGT I GGS N G N AG V+ A+ NGR + V HP
Sbjct: 413 DLDGTVIDGGST-NFGVNQ--AGYVLHSAIHNGRPEVKCVVHLHHP 455
>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
protein Y69A2AR.31 protein.
Length = 1219
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 64 PSNSTTTSRSVSPGPRVLDAPRKPLTSTVPGLW 162
P +T T+ + +P P V P P T+TVP W
Sbjct: 349 PPTTTRTTTTTTPRPTV---PTVPRTTTVPSWW 378
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,836,734
Number of Sequences: 27780
Number of extensions: 272222
Number of successful extensions: 1122
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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