Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0565
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family pr... 30 1.4
At4g30180.1 68417.m04291 expressed protein 29 1.9
At4g13800.1 68417.m02139 permease-related contains 9 predicted t... 29 2.4
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|... 29 3.2
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|... 29 3.2
At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1) domain... 28 4.3
At3g14350.3 68416.m01816 leucine-rich repeat transmembrane prote... 28 4.3
At3g14350.2 68416.m01814 leucine-rich repeat transmembrane prote... 28 4.3
At3g14350.1 68416.m01815 leucine-rich repeat transmembrane prote... 28 4.3
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa... 27 7.5
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ... 27 9.9
At1g60220.1 68414.m06782 Ulp1 protease family protein contains P... 27 9.9
>At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 550
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 459 LHQQHPAHQPSQWKQQLAGTWAWAAGFGRTSDAASGANN 575
LH QH ++ LAG W R+S ++S NN
Sbjct: 13 LHSQHDKSDNLSRRESLAGKSKWRTSLSRSSSSSSSNNN 51
>At4g30180.1 68417.m04291 expressed protein
Length = 158
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 13 SSQQY*WRWRPWSWQKSPSNSTTTSRSVSPGPRVLDAPRK 132
S+Q++ W S SN TTT+ S S G R+L+ P K
Sbjct: 62 SAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDK 101
>At4g13800.1 68417.m02139 permease-related contains 9 predicted
transmembrane domains; contains Pfam PF05653: Protein of
unknown function (DUF803); identified as COG0697,
Permeases of the drug/metabolite transporter (DMT)
superfamily
Length = 336
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 212 HKSSKMGVSTSVCGRTTHNPGTVEVSGFLGASKT 111
HK+ MG STS+ G T+H+P V G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327
>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 435
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 64 PSNSTTTSRSVSPGPRVLDAPRKPL 138
PS+STTT+R+ SP + ++ PL
Sbjct: 27 PSSSTTTTRATSPSSTISESSNSPL 51
>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 424
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 64 PSNSTTTSRSVSPGPRVLDAPRKPL 138
PS+STTT+R+ SP + ++ PL
Sbjct: 27 PSSSTTTTRATSPSSTISESSNSPL 51
>At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein predicted proteins,
Arabidopsis thaliana and Drosophila melanogaster
contains Pfam profile PF00564: PB1 domain
Length = 531
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 349 IFSGGTRVTTSNVQMHGSYNMDTLHNDVAIINHKHVGFTNNIQRINLASGSNNLLV-LGP 525
++ R T Q + + LH+ A + ++ N +Q SG ++ +GP
Sbjct: 390 LYQSVMRPTVQGNQGYYPSPVQRLHHPDAYMEQQNQPGYNVVQPQPTFSGGPQVMTSVGP 449
Query: 526 GLPASEGPPMLLREP 570
+ S GPPM L+EP
Sbjct: 450 QVMTSVGPPMGLQEP 464
>At3g14350.3 68416.m01816 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich repeat
transmembrane protein kinase 1 GB:AAC27894 from [Zea
mays]
Length = 689
Score = 28.3 bits (60), Expect = 4.3
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 340 TAKIFSGGTRVTTSNVQMHGSYN-MDTLH-NDVAIINHKHVGFT-NNIQRINLASGSNNL 510
T + + N Q G+ + + TL ++ I N++ G+ ++++ INL NL
Sbjct: 183 TCSSLTSAKSIYLQNNQFSGTIDILATLPLENLNIANNRFTGWIPDSLKGINLQK-DGNL 241
Query: 511 LVLGPGLPASEGPPMLLREPTTNKNAK*ASRS 606
L GP P G P + + T K+ +RS
Sbjct: 242 LNSGPAPPPPPGTPPISKSSPTPKSGNRGNRS 273
>At3g14350.2 68416.m01814 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich repeat
transmembrane protein kinase 1 GB:AAC27894 from [Zea
mays]
Length = 680
Score = 28.3 bits (60), Expect = 4.3
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 340 TAKIFSGGTRVTTSNVQMHGSYN-MDTLH-NDVAIINHKHVGFT-NNIQRINLASGSNNL 510
T + + N Q G+ + + TL ++ I N++ G+ ++++ INL NL
Sbjct: 146 TCSSLTSAKSIYLQNNQFSGTIDILATLPLENLNIANNRFTGWIPDSLKGINLQK-DGNL 204
Query: 511 LVLGPGLPASEGPPMLLREPTTNKNAK*ASRS 606
L GP P G P + + T K+ +RS
Sbjct: 205 LNSGPAPPPPPGTPPISKSSPTPKSGNRGNRS 236
>At3g14350.1 68416.m01815 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich repeat
transmembrane protein kinase 1 GB:AAC27894 from [Zea
mays]
Length = 717
Score = 28.3 bits (60), Expect = 4.3
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 340 TAKIFSGGTRVTTSNVQMHGSYN-MDTLH-NDVAIINHKHVGFT-NNIQRINLASGSNNL 510
T + + N Q G+ + + TL ++ I N++ G+ ++++ INL NL
Sbjct: 183 TCSSLTSAKSIYLQNNQFSGTIDILATLPLENLNIANNRFTGWIPDSLKGINLQK-DGNL 241
Query: 511 LVLGPGLPASEGPPMLLREPTTNKNAK*ASRS 606
L GP P G P + + T K+ +RS
Sbjct: 242 LNSGPAPPPPPGTPPISKSSPTPKSGNRGNRS 273
>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 301
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 524 LGCRLRKDLRCCFGSQQPTKTPSEPP 601
L C KDLR CF P P PP
Sbjct: 10 LSCLQFKDLRFCFRQYPPPPPPPPPP 35
>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 373
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 355 SGGTRVTTSNVQMHGSYNMDTLHNDVAIINHKHVGFTNNIQRINLASGSNNLLVLGPG 528
+G + +V + YN+ TLH V I + + IN +SGS +L V G
Sbjct: 42 TGTKSMEDDDVSLSLLYNLSTLHEKVHQIQSLVSFYMVSTNNINQSSGSTSLAVANIG 99
>At1g60220.1 68414.m06782 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 604
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 40 RPWSWQKSPSNST 78
R WSW+KSPS S+
Sbjct: 302 REWSWEKSPSQSS 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,411
Number of Sequences: 28952
Number of extensions: 258665
Number of successful extensions: 1025
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -