Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0564
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    29   0.73 
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    28   0.96 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   3.9  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   6.8  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   9.0  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    25   9.0  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   9.0  

>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 217 SSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLGPGDTDLDV 92
           +SK+G+  +   R   +   + +  FL  S ++GPG T+LD+
Sbjct: 320 TSKIGLLKAYPNRVLMDKQGIHIGLFLEESPSIGPGMTNLDI 361


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 424 DTLHNYVAIINHNHVGFTNNIQRINLASEATTL 522
           DT+  +  ++N  HV   N++Q +   SEA TL
Sbjct: 230 DTVKQFEGMMNQTHVKAINHLQEVVRVSEAQTL 262


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 364  FSGGTRVTTSNVQMHGSYNMDTLHNY 441
            FSGG R   + V  +GSY +D L +Y
Sbjct: 1996 FSGGQRDMFNEVLKYGSYIVDALASY 2021


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 585 CWLPKQHRRSFRSLQPRPKYQQSCCFTG 502
           CWLP +   S  S++   K+   C F G
Sbjct: 120 CWLPDRSHHSRVSMRCIRKFDHYCSFVG 147


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 190 VGGRTTHNPGTVEVSGFLGASKTLGPGDTDL 98
           +G    H  G+V   GF G+     P DT +
Sbjct: 70  IGSAIGHTVGSVITGGFSGSGSNNAPADTSV 100


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 250 GSSAIRQCDHKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLG 116
           G+  + Q DH       +  +  ++T N GTV+  G    +K +G
Sbjct: 34  GNRNLIQLDHYGFPTASNFELNPKSTDNCGTVDFQGIPWGNKAIG 78


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = -2

Query: 582 WLP----KQHRRSFRSLQPRPKYQQS 517
           WLP    K+HR+S  S  P PK+ ++
Sbjct: 276 WLPAVASKEHRKSLSSFIPLPKWMKT 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,144
Number of Sequences: 5004
Number of extensions: 33692
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)