Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0564
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    31   0.67 
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    30   1.2  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    30   1.6  
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    29   2.7  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered cu...    28   4.8  
U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protei...    27   8.3  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    27   8.3  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
 Frame = +1

Query: 232 DEWQNFHLGASLLTNTRSVTAAHCWRTRRAQARXFTLALGTANIFSGGTRVTTSNVQMHG 411
           D  Q    GA+++ +   VTAAHC    + Q R F       N  +     +     +H 
Sbjct: 59  DNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVYVREPKN--NRERSFSVKEAYIHS 114

Query: 412 SYNMDTLHNYVAIINHNHVGFTNNIQRINLASEATTLL-------VLGPGL---QASEGP 561
            YN  T  N +A++  +       I+ + L  + + LL       V+G GL   + S G 
Sbjct: 115 GYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGE 174

Query: 562 PMLLREPT 585
           P L+   T
Sbjct: 175 PKLINSQT 182


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 214 WTCD-RTDEWQNFHLGASLLTNTRSVTAAHCW 306
           WT   R    +  H GAS+L  T  +TAAHC+
Sbjct: 40  WTAALRNKATKAHHCGASILDKTHLITAAHCF 71


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 387 GDPGASGEDVSCAKXEGEXTSLGSPGPP 304
           G+PGA G+D    K +GE    G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
           protein R155.2 protein.
          Length = 1308

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 403 MHGSYNMDTLHNYVAIINHNHVGFTNNIQRINLASEATTLLVLGPGLQASEGPPMLLREP 582
           +H S N  TL N   I+N     F  ++Q+IN   E   L+    G   +     +L++ 
Sbjct: 501 LHDSMNQHTLDNMSQIVNVTDAKFLESVQKIN---ETYKLIFKEKGSMTTLSKGTILKDV 557

Query: 583 TTNKN 597
           TT  N
Sbjct: 558 TTVVN 562


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 22/84 (26%), Positives = 35/84 (41%)
 Frame = +1

Query: 214 WTCDRTDEWQNFHLGASLLTNTRSVTAAHCWRTRRAQARXFTLALGTANIFSGGTRVTTS 393
           WT        +   G SL+     +TAAHC+   R +   +++ +G     SG     T+
Sbjct: 71  WTVQLLSRLGHHRCGGSLIDPNFVLTAAHCFAKDR-RPTSYSVRVGGHRSGSGSPHRVTA 129

Query: 394 NVQMHGSYNMDTLHNYVAIINHNH 465
            V +H  YN+    +Y   I   H
Sbjct: 130 -VSIHPWYNIGFPSSYDFAIMRIH 152


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 236 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 105
           S   SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 236 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 105
           S   SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered
           cuticle protein 2 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 387 GDPGASGEDVSCAKXEGEXTSLGSPGPPAM 298
           G PG +GE   C +        GSPGPP +
Sbjct: 218 GQPGDNGEPGKCDEVNVAQGPPGSPGPPGL 247


>U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protein
           20 protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 399 DIGGGDPGASGEDVSCAKXEGEXTSLGSPGPP 304
           D G G+PG  G+  S     GE    G PG P
Sbjct: 194 DGGAGNPGTPGQVRSLPSPPGEPGQPGEPGGP 225


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 343  ALGTANIFSGGTRVTTSNVQMHGSY--NMDTLHNYVAIINHNHVGFTNNIQRINLASEAT 516
            A GTA+  SGG   T+S  Q    Y  ++D  + Y   +   +V   +  +++N    A+
Sbjct: 1353 ACGTASGCSGGATCTSSFCQCQDQYDADVDECYPYEPSVRSRNVKAISGRRKVNRVVSAS 1412

Query: 517  TL 522
            T+
Sbjct: 1413 TI 1414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,271,948
Number of Sequences: 27780
Number of extensions: 219961
Number of successful extensions: 1008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)