Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0563
         (679 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1YKE3 Cluster: CCR4 associated factor-like protein; n=...    36   1.2  
UniRef50_A7NSX5 Cluster: Chromosome chr18 scaffold_1, whole geno...    35   2.1  
UniRef50_UPI00006DB8FC Cluster: hypothetical protein BdolA_01003...    34   2.8  
UniRef50_Q8A1Z2 Cluster: Arabinan endo-1,5-alpha-L-arabinosidase...    34   3.7  
UniRef50_Q22BL5 Cluster: Insect antifreeze protein; n=1; Tetrahy...    34   3.7  
UniRef50_Q3BY16 Cluster: Putative secreted protein precursor; n=...    33   6.4  

>UniRef50_A1YKE3 Cluster: CCR4 associated factor-like protein; n=1;
           Brachypodium sylvaticum|Rep: CCR4 associated factor-like
           protein - Brachypodium sylvaticum (False brome)
          Length = 291

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +2

Query: 272 TQMLPSQS--GDPTR*TRLVSVAAPTSG--CCSITRSRGPRSQGGNVHSGTSVSEGWTRR 439
           T  LP ++  G PTR TR  S A PTS   CCS          G    SG+S S   TR 
Sbjct: 131 TTTLPRRTTCGPPTRATRS-SAATPTSSATCCSWAWHSWAPGAGPTPSSGSSTSAASTRP 189

Query: 440 VSPGRARPPTALIQGPSCW 496
            +    RPP+   + P+ W
Sbjct: 190 AATRTRRPPSPCSR-PTGW 207


>UniRef50_A7NSX5 Cluster: Chromosome chr18 scaffold_1, whole genome
            shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
            chr18 scaffold_1, whole genome shotgun sequence - Vitis
            vinifera (Grape)
          Length = 1193

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +3

Query: 255  PRRLVGLRCCPPSLVTQHAERGW*AWQHRR---PGXXXXXXXEVHAHREVMCTQALVCRR 425
            P+++V +    P  V  H + G   W++ R   PG          AHR V+ +  +   R
Sbjct: 938  PKKIVSVGDLKPEPVLWHEDNGRRPWENGRQNLPGTISGRQLGEAAHRLVVNSLQVKAER 997

Query: 426  GGLGASLLVEPALPLHSYRGPPV 494
             G G  +   P  P   Y GPP+
Sbjct: 998  NGFGDQMHAPPPYPAAPY-GPPL 1019


>UniRef50_UPI00006DB8FC Cluster: hypothetical protein
           BdolA_01003360; n=1; Burkholderia dolosa AUO158|Rep:
           hypothetical protein BdolA_01003360 - Burkholderia
           dolosa AUO158
          Length = 153

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
 Frame = +2

Query: 227 RRWRDSQLRTKTTGGTQMLPSQSGDPTR*TRLVSVAAPTSGCCSITRSRGPRSQGGNVHS 406
           R +R + +RT  +G T M PS  G+PTR   + S  +P++   +     G RS      +
Sbjct: 12  RPFRSATVRTGESGCTTM-PSDVGEPTRVATIRSAGSPSAAVSTGKSPAGARSIAPARCA 70

Query: 407 GTSVSEGW-----TRRVSPGRARPPTALIQGPSCW 496
             S +  W      R  +P   R  +A  + P  W
Sbjct: 71  SNSGAAPWKFAQRNRYGAPSSTRAASASARSPPAW 105


>UniRef50_Q8A1Z2 Cluster: Arabinan endo-1,5-alpha-L-arabinosidase A;
           n=10; Bacteroidetes|Rep: Arabinan
           endo-1,5-alpha-L-arabinosidase A - Bacteroides
           thetaiotaomicron
          Length = 637

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -3

Query: 398 HYLPVSVDLCCE*CCSTRTSVLPRSPAAFSVLGHQTGRATSESH 267
           +YL  S+  CCE   ST T+V+ RS   F     + GR+ S++H
Sbjct: 520 YYLFASIGRCCEGLKSTYTTVVGRSKNLFGPYVDKKGRSMSDNH 563


>UniRef50_Q22BL5 Cluster: Insect antifreeze protein; n=1; Tetrahymena
            thermophila SB210|Rep: Insect antifreeze protein -
            Tetrahymena thermophila SB210
          Length = 3751

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 567  FCSRMTSFGKNNIV*SQ*NFVMTTQQEGPCMSAVGGRARPGETRRVHPSDTLVPECTLP 391
            +C++ T+   N       N VM+++  G C+ A G  A P +  +  P D     CT P
Sbjct: 2996 YCNKCTNGSANGCTTCIANMVMSSKVPGTCVCATGFYANPNQGGQCTPCDPTCKTCTGP 3054


>UniRef50_Q3BY16 Cluster: Putative secreted protein precursor; n=1;
           Xanthomonas campestris pv. vesicatoria str. 85-10|Rep:
           Putative secreted protein precursor - Xanthomonas
           campestris pv. vesicatoria (strain 85-10)
          Length = 162

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 118 STCSTFGLREDRLQLSRGPATRPPRH-SEVRLQDSLMTTLARQSAPYQDDWWDSDVA 285
           S C TF  RED+ +L +G   R  ++ S  R   +L   +A +  PY  D  D + A
Sbjct: 105 SACPTFSEREDQFKLEKGQLIRYEKYGSSYRRTVALYPDIAGKDVPYDKDCSDPEDA 161


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,743,676
Number of Sequences: 1657284
Number of extensions: 14832824
Number of successful extensions: 45191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45166
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)