Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0563
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   2.5  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    26   4.4  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   5.8  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.6  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 483 PCMSAVGGRARPGETRRVHPSDTLVP 406
           PC   VG   RP E  + +PS   VP
Sbjct: 62  PCTQPVGNSGRPVEAFKTYPSTPAVP 87


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 418 VGGVDSARLSWSSPPSHCTHTGALLLGSHYEILLRL 525
           +GG+D A   W    +HC+H    +L  H +I+  L
Sbjct: 194 IGGIDGAIKIWDLRNNHCSH----VLKGHKDIITSL 225


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 423 RGGLGASLLVEPALPLHSYRGPPVG*SLRNFIAITQCYSFRKKSFLNKNSVRISLEYL 596
           +  + + LL   A  L ++ GP  G       A +QC    KK  L+  S +I L+YL
Sbjct: 85  KASITSRLLRRCATNLETFSGPQSGLGFTALRAFSQCQKL-KKIDLSILSEKIDLQYL 141


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 500 VITKFYCDYTMLFFPKEV 553
           +++ FYC Y M F P EV
Sbjct: 76  LLSLFYCAYVMYFLPLEV 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,881
Number of Sequences: 5004
Number of extensions: 54362
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)