Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0563
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594 30 2.0
01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901 29 2.6
01_01_0039 + 302332-302471,302981-303509,304345-304389,304572-30... 29 2.6
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294... 29 3.4
12_01_0839 + 7833111-7833380,7833925-7834161 28 6.0
09_04_0256 + 16148820-16148998,16149547-16150241,16150317-161505... 28 7.9
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 28 7.9
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 28 7.9
>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
Length = 323
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 508 RNDYPTGGPLYECSGRAGSTRRDAPSP 428
R D P G +EC GRAG RD P+P
Sbjct: 122 RGDGPPPGNCFEC-GRAGHWARDCPNP 147
>01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901
Length = 623
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 284 PSQSGDPTR*TRLVSVAAPTSGCCSITRSRGPRSQGGNVHSGTSVSEGWTR 436
P + P L SV+ P + CCS+T GG+ + + S G T+
Sbjct: 92 PVLTAKPATSISLRSVSPPAAACCSLTSIENVADHGGDHLTAGACSSGTTQ 142
>01_01_0039 +
302332-302471,302981-303509,304345-304389,304572-304718,
304834-304899,304993-305058,305171-305257
Length = 359
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 455 ARPPTALIQGPSCWVVITKFYCDYTMLFFPKEVILEQKFSA 577
A PP LIQGPS + + + C ++F P++V++++ +A
Sbjct: 208 AGPPAHLIQGPSNTLQLLRVTC---VIFLPQKVLMKRNTNA 245
>04_04_1374 -
33028790-33028951,33029033-33029087,33029402-33029466,
33029558-33029701,33029825-33029878,33029971-33030220,
33030340-33030446,33031206-33031216,33032682-33032796,
33032897-33033005,33033088-33033203,33033288-33033647
Length = 515
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +2
Query: 257 KTTGGTQMLPSQSGDPTR*TRLVSVAAPTS--GCCSITRSRGPRSQ--GGNVH-SGTSVS 421
+T+G + L +SGDP T SV AP G S + +R P+ G +H +S S
Sbjct: 27 ETSGTSHPLSPRSGDPLPTTTSASVTAPLELPGATSASPARNPKINYTRGILHLYRSSSS 86
Query: 422 EGWTRRVSPGRARPPTALIQGPS 490
T + A P++ GP+
Sbjct: 87 SSSTASYASAVAATPSSSSSGPA 109
>12_01_0839 + 7833111-7833380,7833925-7834161
Length = 168
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 464 PTALIQGPSCWVVITKFYCDYTMLFFPKEVILEQKFSANFIRIPARFEN 610
P A P CW+V + + D +F K + L FS + +++ + EN
Sbjct: 80 PIAPRHAPICWIVEVRMFYDLRHIFL-KAMSLMPSFSPSCLQVDSTGEN 127
>09_04_0256 +
16148820-16148998,16149547-16150241,16150317-16150573,
16150668-16151349,16151423-16151626,16151715-16152449,
16152533-16152698,16153253-16153400
Length = 1021
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/58 (32%), Positives = 23/58 (39%)
Frame = -1
Query: 445 RDAPSPPLRHTSA*VHITXXXXXXXXXXXXXAPGRRCCHAHQPRSACWVTRLGGQHLS 272
R A S P R A V ++ PG RC + H R TRL QHL+
Sbjct: 47 RSAASAPARPVPARVEMSDSRDPVWEHGENIPPGWRCKYCHTKRGGGGATRL-KQHLA 103
>05_01_0595 +
5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/58 (32%), Positives = 23/58 (39%)
Frame = -1
Query: 445 RDAPSPPLRHTSA*VHITXXXXXXXXXXXXXAPGRRCCHAHQPRSACWVTRLGGQHLS 272
R A S P R A V ++ PG RC + H R TRL QHL+
Sbjct: 191 RSAASAPARPVPARVEMSDSRDPVWEHGENIPPGWRCKYCHTKRGGGGATRL-KQHLA 247
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 27.9 bits (59), Expect = 7.9
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +2
Query: 227 RRWRDSQLRTKTTGGTQMLPSQSGDPTR*T--RLVSVAAPTSGCCSITRSRGPRSQGGNV 400
RRW + + ++ G LP+ + P R + R +V+ P SI R+ P S N
Sbjct: 8 RRWASASVTDLSSAGRSPLPAAALSPVRPSARRSPAVSRP-DPAPSIARTIWPSSSSSN- 65
Query: 401 HSGTSVSEGWTRRVSPGRARP-PTALIQGPSCWVVIT 508
SG + TR+ SP + P P A S V T
Sbjct: 66 -SGNTS----TRKASPSPSSPAPAASTPSSSSSVATT 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,171,982
Number of Sequences: 37544
Number of extensions: 457068
Number of successful extensions: 1458
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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