Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0563
         (679 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1720|AAF54968.1|  329|Drosophila melanogaster CG10851-P...    29   5.8  

>AE014297-1720|AAF54968.1|  329|Drosophila melanogaster CG10851-PB,
           isoform B protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
 Frame = +2

Query: 242 SQLRTKTTGGTQM----LPSQSGDPTR*TRLVSVAAPTSGCCSITRSRGPRSQGGNVHSG 409
           S+ R+K+ GG       + S+S   +R  +   V+   S   S TRSR P+ +  +    
Sbjct: 235 SRSRSKSRGGRSKSKSPVKSRSRSRSRSNKSRDVSKSKSKSHSRTRSRSPKRERDSRSRS 294

Query: 410 TSVSEGWTRRVS-------PGRARPPTALIQ 481
            SVS+  +R  S         R+RPPT ++Q
Sbjct: 295 RSVSKRESRSRSRSKSIHRDSRSRPPTVVVQ 325


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,911,450
Number of Sequences: 53049
Number of extensions: 735580
Number of successful extensions: 1878
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1878
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)