Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0563
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19160.3 68417.m02827 expressed protein                             29   2.1  
At4g19160.2 68417.m02826 expressed protein                             29   2.1  
At3g55950.1 68416.m06217 protein kinase family protein contains ...    29   2.8  
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont...    29   3.7  
At1g66980.1 68414.m07616 protein kinase family protein / glycero...    27   8.6  

>At4g19160.3 68417.m02827 expressed protein
          Length = 454

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 189 RRSCRWTSAELKSVFAKTECAAGTPYHLF 103
           RR C WT  E K  F + + A+ + Y LF
Sbjct: 47  RRGCSWTGIEKKIPFPRKKTASASAYPLF 75


>At4g19160.2 68417.m02826 expressed protein
          Length = 453

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 189 RRSCRWTSAELKSVFAKTECAAGTPYHLF 103
           RR C WT  E K  F + + A+ + Y LF
Sbjct: 47  RRGCSWTGIEKKIPFPRKKTASASAYPLF 75


>At3g55950.1 68416.m06217 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           cytokinin-regulated kinase 1 [Nicotiana tabacum]
           gi|10998537|gb|AAG25966
          Length = 814

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 415 CVGGVDSARLSWSSPPSHCTHTGALLLGSHYEILLRLHN 531
           C+G  DS +L+  +P     ++ +L LGS++   +R+ N
Sbjct: 222 CIGNNDSGQLNVIAPDQPNLYSSSLSLGSNFTCAMRISN 260


>At2g34680.1 68415.m04260 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; identical to cDNA hypothetical protein
           (AIR9) mRNA, partial cds GI:3695020
          Length = 1661

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +2

Query: 242 SQLRTKTTGGTQMLPSQSGDPTR*TRLVSVAAPTSGCCSITRSRGPRSQGGNVHSGTSVS 421
           S+  TK+TG +   P  S  P     + S  AP+S       S G R+  G +HS  +  
Sbjct: 150 SRSLTKSTGFSLSKPESSARPAMSVSVSSKRAPSSS----VDSSGSRTSSGRLHSTLTSG 205

Query: 422 EGWTRRVSPGRARPPT 469
              ++  SP     P+
Sbjct: 206 RTVSKVSSPSAGSSPS 221


>At1g66980.1 68414.m07616 protein kinase family protein /
           glycerophosphoryl diester phosphodiesterase family
           protein similar to leaf rust resistance kinase Lr10
           GI:1680685 from [Triticum aestivum]; contains Pfam
           profiles PF03009: Glycerophosphoryl diester
           phosphodiesterase family, PF00069: Protein kinase domain
          Length = 1109

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 274 SPTSRLGTELTVAPASSSKSLAGVL 200
           SPTS LGT  T+A    S S+AGV+
Sbjct: 728 SPTSTLGTPSTIAKPLISWSVAGVV 752


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,098,760
Number of Sequences: 28952
Number of extensions: 315865
Number of successful extensions: 891
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)