BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= mg--0562 (594 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 28 1.2 SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 28 1.2 SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 27 2.7 SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 26 3.6 SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 26 4.8 SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.3 >SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 942 Score = 27.9 bits (59), Expect = 1.2 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +2 Query: 512 SWSSLDEWCYSRGPELG 562 SW +DEWC G E+G Sbjct: 636 SWIDVDEWCIRGGSEIG 652 >SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosaccharomyces pombe|chr 3|||Manual Length = 339 Score = 27.9 bits (59), Expect = 1.2 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = -1 Query: 222 DDRATASKHSAGWIHHAEGGVVGVLTGSRLPTRYNTEICGIYIFVDIFNEV 70 D T S H W H+++GG LT L R + E+ +D+++++ Sbjct: 14 DSYTTDSSH-INWSHYSDGGFTLSLTSGLLQIRQHEELIQSINLLDLWHQL 63 >SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 273 Score = 26.6 bits (56), Expect = 2.7 Identities = 10/34 (29%), Positives = 18/34 (52%) Frame = +1 Query: 70 YFIEDINKDVDTTNLRIVSGWEATPGQHPHHAAL 171 Y ED++ D + + ++G A + PHH+ L Sbjct: 95 YNSEDLSNDTENNETKSINGKSALDLKEPHHSEL 128 >SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces pombe|chr 2|||Manual Length = 504 Score = 26.2 bits (55), Expect = 3.6 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 2/82 (2%) Frame = +2 Query: 335 MVQLPTRMTTR--GLTWYSPTTSLY*DSIDRSSLPDTSSQFVCNRRLMPSGTTTDSPCMP 508 + LP T GL SP Y + L + S + + + P+G+ + P + Sbjct: 73 VTNLPNSSNTSQVGLNNISPAPVGYVPGSKTNELANNSMEM---QEISPNGSASLPPPVS 129 Query: 509 RSWSSLDEWCYSRGPELGILAC 574 SW +D W EL C Sbjct: 130 ESWRRIDRWAEENYYELYCQLC 151 >SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharomyces pombe|chr 1|||Manual Length = 421 Score = 25.8 bits (54), Expect = 4.8 Identities = 8/27 (29%), Positives = 16/27 (59%) Frame = +1 Query: 73 FIEDINKDVDTTNLRIVSGWEATPGQH 153 F++D+N+ +D + ++ V PG H Sbjct: 172 FLKDVNRSIDLSFIKYVGDAAGRPGDH 198 >SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 433 Score = 25.4 bits (53), Expect = 6.3 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +1 Query: 358 DDXRPNLVQPNDISLLRLHRPVVFTRYLQPIRVQSSAD 471 D LV PN+ + +H PVV T Y +S A+ Sbjct: 132 DSPNMQLVVPNNFQQMFIHHPVVDTIYSPEESSESQAE 169 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,844,126 Number of Sequences: 5004 Number of extensions: 61657 Number of successful extensions: 161 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 161 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 258201856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -