Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0562
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_04_0010 - 7487455-7489490,7489569-7489980 31 0.52
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 31 0.52
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 2.1
02_01_0100 + 743467-744868,745066-745127 29 2.8
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 29 3.7
10_08_0508 - 18416688-18416795,18417058-18417477 29 3.7
07_01_0044 - 348439-349539,351979-352301,352418-352550 29 3.7
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 29 3.7
01_01_1047 + 8270926-8271073,8271175-8271329 28 4.9
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428... 28 6.5
02_01_0752 - 5583757-5584092 28 6.5
01_06_0128 - 26727484-26728383 28 6.5
01_03_0308 - 14883728-14884120 28 6.5
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439... 27 8.5
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945... 27 8.5
>10_04_0010 - 7487455-7489490,7489569-7489980
Length = 815
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = -1
Query: 519 DHDRGIH---GESVVVPEGISRRLHTNWLEVSG 430
D+D GIH G++ VV + +SR+ H N LEV G
Sbjct: 312 DYDVGIHYHPGKANVVADALSRKSHCNTLEVRG 344
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 243 SDH-PLPVDDRATASKHSAGWIHHAEGGVVGVLTGSR 136
+DH P P DDRAT+ H HH GG G G R
Sbjct: 80 ADHSPSPRDDRATSWDHGRHHHHHNSGGRRGSFGGRR 116
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 246 SSLVAGRITVVIRAGVTNLTTPEYISEST 332
+ LV GR+ V + G ++T+P YISE++
Sbjct: 120 AQLVVGRVFVGLGVGTASMTSPLYISEAS 148
>02_01_0100 + 743467-744868,745066-745127
Length = 487
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -1
Query: 234 PLPVDDRATASKHSAGWIHHAEGGVVGVLTGSRLPTRYNTEICGIYIFV 88
PLP DD ATA S W++ + V S T ++T G+ I V
Sbjct: 25 PLPADDDATAGV-SPSWVYLEDRAYVSPDAVSNSTTAFSTTTTGVSIHV 72
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = -3
Query: 316 YSGVVKFVTPARMTTVMRPATSELQ*SPTPCGR*SHRKQTLRRLDPPCGGRRGGGA 149
YSG + P +PAT + + P G RK+ L L P GR G A
Sbjct: 156 YSGHIARNCPTSRAARAQPATGSKEVATKPAGGEKPRKEVLEALPPRKKGREEGVA 211
>10_08_0508 - 18416688-18416795,18417058-18417477
Length = 175
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 264 VRQPVSCSDHPLPVDDRATASKHSAGWIHHAEGGVVGVLTG 142
+R P C HP+P A K + GW + GGV+G L+G
Sbjct: 103 LRLPKQC--HPVPGSPLAKTGKAAGGWWN---GGVLGQLSG 138
>07_01_0044 - 348439-349539,351979-352301,352418-352550
Length = 518
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 228 GVGDHCSSLVAGRITVVIRAGVTNLTTPEYISE 326
G ++ + L+ GRI + + G N + P Y+SE
Sbjct: 128 GAAENVAMLIVGRILLGVGVGFANQSVPVYLSE 160
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = -1
Query: 255 PVSCSDHPLPVDDRATASKHSAGWIHHAEGGVVG----VLTGSRL--PTRYNTEICGIYI 94
P C+ H +P++ +++ SK W+++A VV L +R+ P Y+ C + I
Sbjct: 363 PALCT-HRIPIEPKSSPSKEPQRWLNNAMREVVKKDVLKLLHTRIIYPVPYSEWRCMMSI 421
Query: 93 FVDIFNEV 70
F D+ E+
Sbjct: 422 FSDMIEEI 429
>01_01_1047 + 8270926-8271073,8271175-8271329
Length = 100
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = +1
Query: 112 LRIVSGWEATPGQHPHHAAL-RMVDPTGGVFACGGSIVHREWVITAAHW-----LPDASR 273
LR GW P R++ T GVF+ GG++ WV+ H+ +P + R
Sbjct: 3 LRRALGWSEGEVMRPESKPCSRLMRQTAGVFSVGGALSF--WVLCRLHYGPRITVPRSLR 60
Query: 274 WSFAPAL 294
W+ A+
Sbjct: 61 WASCGAI 67
>04_04_0481 -
25541355-25541849,25541933-25542535,25542730-25542837,
25542925-25543260,25543391-25543461,25543692-25543824
Length = 581
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 252 LVAGRITVVIRAGVTNLTTPEYISEST 332
++ GRI V + G+ ++T P YISE++
Sbjct: 122 IIIGRIFVGLGVGMASMTAPLYISEAS 148
>02_01_0752 - 5583757-5584092
Length = 111
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 200 NTPPVGSTMRRAAWWG 153
N PP G +RA WWG
Sbjct: 3 NVPPAGGRRQRAWWWG 18
>01_06_0128 - 26727484-26728383
Length = 299
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 184 DPPCGGRRGGGADRESPPNQI 122
D CGGRR G RE PP Q+
Sbjct: 23 DEGCGGRRVGSMVRELPPAQM 43
>01_03_0308 - 14883728-14884120
Length = 130
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 422 SSLPDTSSQFVCNRRLMPSGTTTDSPCMPRSWSSLDEWCYSRGPELGILACCRQPDL 592
+S DT + + + + + T + SP S S +DE R PE+G R+P L
Sbjct: 25 ASRTDTGATALPSPSPIENSTASRSPFPTTSPSMIDEQTTERAPEIGGAVAGRKPSL 81
>04_04_0345 -
24542869-24543540,24543725-24543805,24543845-24543910,
24543991-24544098,24545101-24545436,24545516-24545586,
24546105-24546252
Length = 493
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 252 LVAGRITVVIRAGVTNLTTPEYISES 329
L+ GR+ V + G+ ++T P YI+E+
Sbjct: 127 LILGRLLVGLGVGIASVTAPVYIAEA 152
>04_04_0217 -
23693124-23693535,23693965-23694052,23694428-23694503,
23694729-23694787,23694853-23694934,23695533-23696577,
23696700-23696998
Length = 686
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 237 HPLPVDDRATASKHSAGWIHHAEGGVVGVLTG 142
HP+P A +SK + GW + GV+G L+G
Sbjct: 418 HPVPGSPSARSSKEAGGWWNR---GVLGQLSG 446
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,391,209
Number of Sequences: 37544
Number of extensions: 500919
Number of successful extensions: 1660
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1659
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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