Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0562
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    35   5e-04
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    28   0.060
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   3.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 35.1 bits (77), Expect = 5e-04
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
 Frame = +1

Query: 115 RIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHWLPDASRWSFAPAL 294
           RIV G      + P  A ++     G +  CG +I+ + +V+TAAH + D +    A  +
Sbjct: 160 RIVGGTNTGINEFPMMAGIKRTYEPGMI--CGATIISKRYVLTAAHCIIDENTTKLAIVV 217

Query: 295 RT*PLRNTFRNRQNGTTTHT---------YDDXRPNLVQPNDISLLRLHRPVVFTRYLQP 447
                 +  +   N T  H+         YD    +  Q NDI+LL+  + + F   + P
Sbjct: 218 GEHDWSS--KTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGP 275

Query: 448 --IRVQSSADAFRNYD 489
             +  Q   D+F   D
Sbjct: 276 ACLPFQHFLDSFAGSD 291


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 0.060
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 120 NTEICGIYIFVDIFNEVGLDFLGKALPTKHK 28
           N E+CGIY   +   ++ ++F+   +P +H+
Sbjct: 88  NEEVCGIYFLAEPDQKIEINFITFDIPCEHR 118


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 353 VWVVVPFCRFRNVFRSGQVRN 291
           VW++  FC ++ V  +G+V N
Sbjct: 183 VWILCYFCIWKGVKTTGKVVN 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,066
Number of Sequences: 438
Number of extensions: 4685
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)