Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0561
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 28 0.89
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 28 0.89
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 27 2.0
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 27 2.7
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 27 2.7
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 26 3.6
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 26 3.6
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 26 3.6
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 4.7
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 4.7
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 26 4.7
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 26 4.7
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 25 6.2
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 25 6.2
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 25 6.2
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 25 8.3
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 25 8.3
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 28.3 bits (60), Expect = 0.89
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 208 HQERPARHGNTQR*TVDFRGARAQRGRPLSSALEDDEFNEDITES 342
H P+RH + ++ + ++A R PL+ DDE N T S
Sbjct: 371 HTSMPSRHHSHRKKEKEKEKSKAPRVTPLTHKTNDDEANHSETSS 415
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 28.3 bits (60), Expect = 0.89
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 68 QGVPASTTANYNKGESYYRPV----LDRLDGKAPIVREPERESIRADVDN 205
Q + A + Y ++YY + LDR+ + V E +S++ D+DN
Sbjct: 367 QQIAAEDISLYGSADTYYERITQILLDRISSLSESVNEQNIKSLQTDIDN 416
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 56 VLEEQGVPASTTANYNKGESYYRPVLDRLDGKAPIV 163
+L+ +P+S A + + + PV+D L GK PI+
Sbjct: 328 ILKFLNLPSSDKALFKMDKVHTNPVVDSLQGKNPIL 363
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 491 GAADFRVTNPDAFEYFVRNPHSVFEIGNAVLKVDVISE 378
G ADFRVTN + +V + E GN + V+ E
Sbjct: 557 GVADFRVTNVQVYAGYVLHT-GFLEYGNLTVNDSVVCE 593
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 464 PDAFEYFVRNPHSVFEIGNAVLKVDVISE 378
PD F+RN +S+F+I A L V + E
Sbjct: 442 PDFVTTFLRNANSIFKIRGASLSVQGVDE 470
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/69 (24%), Positives = 28/69 (40%)
Frame = -1
Query: 579 RAVHFVSELSSSLLAMRFSVRSSFPAEHVWRC*LPSDQSRRFRVFCQKSSFGFRDWQRCS 400
RA F+ + S + +F+ P H RC + + R + K F + R
Sbjct: 298 RARTFLLQKSKNTSDKQFNAHIVAPCPHDGRCPIDIENGVRANICSFKQHFFLSPFSRLY 357
Query: 399 QSRCHQRTS 373
R H+R+S
Sbjct: 358 VPRSHRRSS 366
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/69 (24%), Positives = 28/69 (40%)
Frame = -1
Query: 579 RAVHFVSELSSSLLAMRFSVRSSFPAEHVWRC*LPSDQSRRFRVFCQKSSFGFRDWQRCS 400
RA F+ + S + +F+ P H RC + + R + K F + R
Sbjct: 298 RARTFLLQKSKNTSDKQFNAHIVAPCPHDGRCPIDIENGVRANICSFKQHFFLSPFSRLY 357
Query: 399 QSRCHQRTS 373
R H+R+S
Sbjct: 358 VPRSHRRSS 366
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 444 KILESVGIGHSEVSSARRALQETKNAQKSAS 536
K +ES+ + HS + ++ LQE +N KS S
Sbjct: 70 KEMESLQVIHSHLPVLQKGLQECQNLNKSVS 100
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 165 ANPNAKVFELMSTTASRAPCTTWKHPTMNCRLQR-CTRPAGQTSLF 299
A+P+AK STT S P ++ KH T+ L + T QT +F
Sbjct: 397 ADPSAKPGATASTTPSEPPPSSIKHKTLQEILNKWSTDLTTQTEVF 442
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 421 SRLATLFSKSMSSANLEVFFWRAGVSTIL*CLR*IHRLPRQKREVCP 281
SRL + + S++ + + GVS I C+R I K EV P
Sbjct: 799 SRLVSSIDAELGSSSGSILVFLPGVSNIARCIREIKSKDGSKFEVLP 845
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 379 SLMTSTLRTALPISKTE*GFLTKYSKASGLVTRKSAAPDVL 501
+L++ R+ LP+S T+ ++YS G++ + ++ VL
Sbjct: 106 NLLSKAFRSTLPMSSTKDSKKSRYSSPDGVLAKTASFLSVL 146
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 372 SRFADDIDFENSVA 413
S F DD+DFENS++
Sbjct: 141 SNFQDDLDFENSIS 154
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -1
Query: 324 VKFIVFQGRRERSAPLGACTSEVDSSSLGVSMSCR 220
+KFIV+ G R+ +A + + S +++ +GV+ R
Sbjct: 53 IKFIVWHGSRKHNACIRSVYSIINNMIIGVTQGFR 87
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 324 VKFIVFQGRRERSAPLGACTSEVDSSSLGVSMSCR 220
+KFIV+ G R+ +A + S +++ +GV+ R
Sbjct: 53 IKFIVWHGSRKHNACIRTAYSIINNMIIGVTQGFR 87
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 281 RWARAPLKSTVHRWVFP 231
RW APL H+W+ P
Sbjct: 176 RWLYAPLHKLHHKWIVP 192
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 34 RKQSKMSRVGRTRRTRVYDCQLQQGRELLP 123
++QS + +RT +YD L++G ++P
Sbjct: 11 KRQSSTAASSSLKRTPLYDLHLKEGATIVP 40
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Frame = +2
Query: 62 EEQGVPASTTANYNKGESYYRPVLDRLDGKAPIVREP--------ERESIRADVDNRIKS 217
+E+ P+S T + G+++ + RLD P++ + E + + V
Sbjct: 326 DEKSYPSSGTQSPFYGKNFLPQITPRLDSVVPLISDSPMTPNSVYSNEGVTSSVSGNATP 385
Query: 218 ALHDMETPNDELSTSEVH 271
A T ND S S +H
Sbjct: 386 ASVRQSTQND-FSNSNIH 402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,818
Number of Sequences: 5004
Number of extensions: 46003
Number of successful extensions: 173
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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