Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0561
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521...    31   0.52 
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993...    31   0.91 
10_01_0182 - 2052037-2052044,2053163-2053748,2055337-2055396           28   4.8  
02_02_0714 - 13222425-13223605,13224422-13224548,13225417-132254...    28   4.8  
02_01_0553 - 4078792-4079131,4079846-4080771                           28   6.4  
12_01_0748 - 6728221-6728305,6728788-6728842,6729202-6729289,672...    27   8.5  
03_02_0977 - 12842948-12843572,12844326-12844741                       27   8.5  

>03_02_0039 -
           5213699-5214775,5214815-5215093,5215300-5215776,
           5216073-5216438
          Length = 732

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = -1

Query: 573 VHFVS--ELSSSL-LAMRFSVRSSFPAEHVWRC*LPSDQSRRFRVFCQKSSFGFRDWQRC 403
           +HFV    L S+L +A+ F  +S+      WR  +P    R+   FC+    G  +W+  
Sbjct: 103 LHFVKWRSLKSALGVALMFRKKSTTTPRRWWRSTIPRPSPRQSAAFCR----GTSEWRMA 158

Query: 402 SQSRCH-QRTSKSFSGAQAFQR 340
           S+SR    ++S +     A++R
Sbjct: 159 SRSRSECSQSSPTIQRRHAWRR 180


>02_01_0015 -
           98311-98412,98635-98707,98830-98921,99139-99230,
           99363-99432,99683-99781,100008-100093,100541-100655,
           100853-100918,101064-101143,101226-101301,101915-102151,
           102559-102590,102993-103047,103384-103498,104497-104579,
           105182-105232,105740-105802,105945-106010,106144-106279,
           106503-106591,106844-106964,107138-107340,107434-107820
          Length = 862

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 397 LRTALPISKTE*GFLTKYSKASGLVTRKSAAPDVLCRKRRTHRKAHRQE 543
           LR A P  K +    T    +SGLV++K ++  ++C++    RK H+ E
Sbjct: 390 LRQASPYMKIK---YTNLEDSSGLVSQKRSSASLICQENTKKRKIHKVE 435


>10_01_0182 - 2052037-2052044,2053163-2053748,2055337-2055396
          Length = 217

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +3

Query: 363 KKTSRFADDIDFENSV-ANLENRMRIS-DKILES-VGIGHSEVSSARRALQETKNAQKSA 533
           K   RFAD++  E  + A +    R++ D++L+  VG+G  E    RRAL     +  S+
Sbjct: 27  KDDVRFADEVAAEELLHARVRRAQRLAVDELLQPHVGVGLHENHPFRRALHNQLTSSSSS 86

Query: 534 SPGDSKI 554
           +  D ++
Sbjct: 87  TCDDGEL 93


>02_02_0714 -
           13222425-13223605,13224422-13224548,13225417-13225461,
           13225776-13225840,13226138-13226264
          Length = 514

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = -1

Query: 336 CDVFVKFIVFQGRRERSAPLGACTSEVDSSSLGVSMSCRALLMRLSTSARILSRSGSRTI 157
           CD+  +F   Q  +ER+ P   CT++ D     +S + R  +  L   AR + +S   T+
Sbjct: 110 CDIINRF---QTMKERAEPYIKCTAQSDIKICDLS-NPRFDICELCGDARTIGQSS--TV 163

Query: 156 GALPSKRSSTG 124
             +P  R+S G
Sbjct: 164 VYVPQNRASNG 174


>02_01_0553 - 4078792-4079131,4079846-4080771
          Length = 421

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 38  NKAR*AVLEEQGVPASTTANYNKGESYYRP 127
           N++R  +L+  G+  + TA+Y+ G S +RP
Sbjct: 71  NESRTVILKHPGLRDAPTASYSVGNSVFRP 100


>12_01_0748 -
           6728221-6728305,6728788-6728842,6729202-6729289,
           6729681-6729818,6729978-6730142,6730235-6730354,
           6730555-6730631,6730738-6731113,6731523-6732617
          Length = 732

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 469 PIPTLSSILSEILIRFSRLATLFSK 395
           P+PT SSIL  +L  F+RL  L  K
Sbjct: 272 PVPTNSSILDSVLEGFARLQNLNGK 296


>03_02_0977 - 12842948-12843572,12844326-12844741
          Length = 346

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 378 TSKSFSGAQAFQRFCDVFVKFIVFQGRRERSAPLGACTSEV 256
           T +  +G  A +   D  V+ ++F+ RRE  +P GA  +E+
Sbjct: 212 TKRLVAGLLAVESGQDAVVRGLLFEHRRETVSPYGATVAEL 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,196,840
Number of Sequences: 37544
Number of extensions: 323925
Number of successful extensions: 979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)