Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0561
(591 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3) 33 0.17
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18) 32 0.30
SB_11869| Best HMM Match : Excalibur (HMM E-Value=8) 30 1.2
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4) 28 5.0
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0) 28 5.0
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5) 28 5.0
SB_40567| Best HMM Match : Beta-lactamase (HMM E-Value=9.7e-28) 27 8.7
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_48008| Best HMM Match : M (HMM E-Value=0.0068) 27 8.7
SB_10484| Best HMM Match : Herpes_HEPA (HMM E-Value=1.4) 27 8.7
>SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)
Length = 321
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 192 LMSTTASRAPCTTWKHPTMNCRLQRCTRPAGQTSLFCLG 308
L+ T +RAP +T HP L++ T +G TS+ C+G
Sbjct: 17 LLLTARTRAPTSTQSHPEPYKTLEKATVKSGCTSIGCIG 55
>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
Length = 957
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +3
Query: 342 VETPARQKKTSRFADDIDFENSVANLENRMRISDKILESVGIGHSEV 482
V+T A+ + R +DD D ++S+ N+E +MR + K L G+ S++
Sbjct: 264 VDTNAKAAEFDRDSDDSDDDSSLDNVETKMRQAYKALVGYGLIDSDI 310
>SB_11869| Best HMM Match : Excalibur (HMM E-Value=8)
Length = 269
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Frame = +2
Query: 62 EEQGVPASTTANYN-KGESYYRPVLDRLDGKA--PIVREPERESIRADVDNRIKSALHDM 232
E Q + +S+T N K +P D+ DG + EP E + + + + +
Sbjct: 45 EIQPLASSSTPNEQPKHVPTSQPPNDKADGAGCEQVESEPREEPVGEEAKVSHQETITE- 103
Query: 233 ETPNDELSTSEVHAPSGADLSLLPWKTMNLTKTSQNR*NACAPEKDFE 376
E +E + E +PS + PW T+ + +R A AP+++ E
Sbjct: 104 EPAKEEPAKEEAASPSDETTTDSPWDASAPTEEAPSRDEAAAPKQEEE 151
>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 98 YNKGES-YYRPVLDRLDGKAPIVREPERESIRADVDNRIKSALHDMETP 241
YN ++ YYR L D PI+R R+ RA +D + LH E P
Sbjct: 679 YNAQDTIYYRAALKLRDQGRPIIRAARRQIERAGIDP--VTGLHTKEAP 725
>SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)
Length = 391
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 400 RTALPISKTE*GFLTKYSKASGLVTRKSAAPDVLCRKRRTHRKAHRQET 546
++ L S E + + K+ L+T+K CRK+R H K +ET
Sbjct: 231 KSGLKSSANENAYNCQIVKSFYLITQKQTKITFSCRKKRCHGKTPYEET 279
>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 961
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 348 TPARQKKTSRFADDIDFENSVANLENRMRISDKILESVGIGHSEVSSARRALQETKNAQK 527
T + KK RFA+DI ++ +EN +++L++ E+ S R L+++K K
Sbjct: 127 TQSDLKKARRFAEDIQMQSKRLKVEN-----NELLKAAQTQDQEIESLRAELRKSKAELK 181
Query: 528 S 530
+
Sbjct: 182 A 182
>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3464
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 32 TENKAR*AVLEEQGVPASTTANYNKGESYYRPVLDRLDG-KAPIVREPERESIRA-DVDN 205
TEN+A A+ + +GV S + + E Y + LD + P P R++ A D
Sbjct: 2444 TENRAPSAIRDIRGVTRSRSQDTTIPEEYVNDTFESLDSTRTPTHSTPVRKASPARDSLK 2503
Query: 206 RIKSALHDMETPNDELSTSE 265
+ S+ D + +E S +E
Sbjct: 2504 QRSSSKEDEQKSEEETSMTE 2523
>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
Length = 1649
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 233 ETPNDELS-TSEVHAPSGADLSLLPWKTMNLTKTSQNR 343
E+ N L TS ++LSL+P+ + N TKT+ NR
Sbjct: 117 ESDNTSLEVTSLPELEENSELSLMPFASENTTKTTSNR 154
>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3307
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 222 CTTWKHPTMNCRLQRCTRPAGQTSLF 299
C KHP M CRL R +R S +
Sbjct: 2927 CNDLKHPAMGCRLYRFSRNVNPNSTY 2952
>SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)
Length = 565
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 233 ETPNDELS-TSEVHAPSGADLSLLPWKTMNLTKTSQNR 343
E+ N L TS ++LSL+P+ + N TKT+ NR
Sbjct: 258 ESDNTSLEVTSLPELEENSELSLMPFASENTTKTTSNR 295
>SB_40567| Best HMM Match : Beta-lactamase (HMM E-Value=9.7e-28)
Length = 1006
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 146 GKAPIVREPERESIRADVDNRIKSALH---DMETPNDELSTSEVHAPSGADL 292
G I+R P+R S+R+D + ++ AL+ E+P EL S + AD+
Sbjct: 505 GSPQILRGPDRNSVRSDPYDSLRRALNYPVAPESPCQELKHSPRDSSKYADM 556
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -1
Query: 93 AVVDAGTPCSSN 58
A+ DAGTPCSSN
Sbjct: 1300 AIADAGTPCSSN 1311
>SB_48008| Best HMM Match : M (HMM E-Value=0.0068)
Length = 1068
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 143 DGKAPI-VREPERESIRADVDNRIKSALHDMETPNDEL 253
D KA + +R+ ES+ A V N++ A++D+E N+EL
Sbjct: 20 DHKAQLQIRDQNIESLTASV-NKLSLAVNDLEMENEEL 56
>SB_10484| Best HMM Match : Herpes_HEPA (HMM E-Value=1.4)
Length = 237
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 485 ADFRVTNPDAFEYFVRNPHSVFEIGNAVLKVDVISEPRSLF 363
A FR+ NP+AF +P + F+I NA + P + F
Sbjct: 7 AYFRIFNPEAFCLAFAHPEAYFQILNAEAFCLAFAHPEAYF 47
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,736,084
Number of Sequences: 59808
Number of extensions: 367431
Number of successful extensions: 1295
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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