Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0561
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   0.97 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   0.97 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   5.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   6.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   6.8  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   9.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 167 EPERESIRADVDNRIKSALHDMETPNDELST 259
           EPE E  +  V        H  E PNDE++T
Sbjct: 297 EPEIEISQNSVSTGSDKENHKTEEPNDEVAT 327


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 456 SVGIGHSE-VSSARRALQETKNAQKSASPGDSKIIRSRNGL 575
           ++G+G S  +SS R A   T      +SP D  II   NGL
Sbjct: 231 ALGVGVSNFLSSTRTAETGTIRKCDESSPHDQVIIGGSNGL 271


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 192 LMSTTASRAPCTTWKHPTMNCRLQRCTRPAGQ 287
           ++S  +S       +  T +CR  + TRP G+
Sbjct: 1   MLSNNSSMTQTELLQELTNDCRYDKMTRPPGE 32


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = +2

Query: 407 RCQSRKPNEDF*QNTRKRRDWSLGSQQRQTCSAGNEERTEKRIARRLEDN 556
           R    K N +   + ++  +   G++Q      GN +   KR   R  DN
Sbjct: 474 RQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDN 523


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 393 DFENSVANLENRMRISDKILESV 461
           DF NS+   EN++  SD + E +
Sbjct: 545 DFWNSINFNENKLHTSDTLKEEL 567


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 393 DFENSVANLENRMRISDKILESV 461
           DF NS+   EN++  SD + E +
Sbjct: 545 DFWNSINFNENKLHTSDTLKEEL 567


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 499 LCRKRRTHRKAHRQET 546
           +C++ R     HRQET
Sbjct: 170 ICQRERVASVVHRQET 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,316
Number of Sequences: 438
Number of extensions: 3265
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)