Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0561
(591 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14990.1 68418.m01758 hypothetical protein 31 0.76
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 29 1.8
At4g15320.1 68417.m02344 cellulose synthase family protein simil... 29 3.1
At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containi... 29 3.1
At1g68790.1 68414.m07863 expressed protein 29 3.1
At2g01280.1 68415.m00042 transcription factor IIB (TFIIB) family... 27 7.1
At3g43670.1 68416.m04655 copper amine oxidase, putative similar ... 27 9.4
At2g36145.1 68415.m04437 expressed protein 27 9.4
At2g02710.3 68415.m00213 PAC motif-containing protein similar to... 27 9.4
At2g02710.2 68415.m00212 PAC motif-containing protein similar to... 27 9.4
At2g02710.1 68415.m00211 PAC motif-containing protein similar to... 27 9.4
At1g62810.1 68414.m07091 copper amine oxidase, putative similar ... 27 9.4
At1g50270.1 68414.m05636 pentatricopeptide (PPR) repeat-containi... 27 9.4
>At5g14990.1 68418.m01758 hypothetical protein
Length = 666
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 161 VREPERESIRADVDNRIKSALHDMETPNDELSTSEVHAPSGADLSLLPWKTMNL 322
++E E +++ VD ++ + +ET DEL E PS D+ +L TM+L
Sbjct: 150 IKEDEFSELKSSVDQQVMNLRQKLETEYDEL-RGETEDPSAVDIDVLK-GTMDL 201
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 164 REPERESIRADVDNRIKSALHDMETPNDELSTSEVHAPSGADLSLLPWK 310
REP S+ A D+ +S + M TP E + +++ S D ++ W+
Sbjct: 1051 REPGSSSVDAKGDSGCQSIPYSMNTPQREKADNQLIRSSDQDQNMCKWR 1099
>At4g15320.1 68417.m02344 cellulose synthase family protein similar
to Zea mays cellulose synthase-5 [gi:9622882], -2
[gi:9622876], -1 [gi:9622874]
Length = 828
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 381 ADDIDFENSVANLENRMRIS-DKILESVGIGHSEVSSARRALQETKNAQKS 530
+DD++ + S++++ +R +S D ++ G V S ALQ N QKS
Sbjct: 464 SDDLEDDGSLSSVASREFLSEDSLVRKYGSSKELVKSVVDALQRKSNPQKS 514
>At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 850
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 497 CSAGNEERTEKRIARRLEDNSLTKWTALKSG 589
CSA +++ R+ED+S+ WTAL +G
Sbjct: 315 CSADGSVDDCRKVFDRMEDHSVMSWTALITG 345
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +3
Query: 378 FADDIDFENSVANLENRMRISDKILESVGIGHSEVSSARRALQETKNAQKSASPGDSKII 557
F D E +L++ M+ SDK G G S R Q TK + + P D +
Sbjct: 831 FTDSRIQEGPEGSLQSEMK-SDKPRRGRGRGRGRGKSVRGRSQATKAVSRDSKPSDGETP 889
Query: 558 RSR 566
R R
Sbjct: 890 RKR 892
>At2g01280.1 68415.m00042 transcription factor IIB (TFIIB) family
protein contains Pfam domain, PF00382: Transcription
factor TFIIB repeat
Length = 561
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 375 RFADDIDFENSVANLENRMRISDKILESVGIGHSEVSSARRALQETKNAQKSASPGDSK 551
R ++ +F V ++N I+ SVG S R+A+ E +N + + GD +
Sbjct: 28 RILENFNFSTDVTFVKNAAGQVCNIVTSVGNSSSRDRRRRKAIDELRNLKDALGIGDER 86
>At3g43670.1 68416.m04655 copper amine oxidase, putative similar to
copper amine oxidase [Cicer arietinum]
gi|3819099|emb|CAA08855
Length = 687
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = -2
Query: 542 SWRCAFLCVLRFLQSTSGAADFRVTNPDAFEYFVRNPHSVFEIGN 408
S R ++L V +++ T A +++ D +E+ + NP+ + +GN
Sbjct: 515 SRRKSYLKVKKYVAKTEKDAQIKMSLYDPYEFHLVNPNRLSRLGN 559
>At2g36145.1 68415.m04437 expressed protein
Length = 186
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 504 QETKNAQKS--ASPGDSKIIRSRNGLL*KAV 590
Q T+N +K A PG+ +I+RS G L KAV
Sbjct: 150 QATRNGRKKDKAPPGEERIMRSLLGALKKAV 180
>At2g02710.3 68415.m00213 PAC motif-containing protein similar to
nonphototropic hypocotyl 1 [Zea mays] GI:2687358;
contains Pfam profile PF00785: PAC motif
Length = 358
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/57 (24%), Positives = 20/57 (35%)
Frame = -1
Query: 468 QSRRFRVFCQKSSFGFRDWQRCSQSRCHQRTSKSFSGAQAFQRFCDVFVKFIVFQGR 298
Q R V C G DW++C S S+ +A + V + GR
Sbjct: 180 QDRALPVECDDDEQGLEDWEQCEASE-----SEKLKATEAINNVLSILVHYSELSGR 231
>At2g02710.2 68415.m00212 PAC motif-containing protein similar to
nonphototropic hypocotyl 1 [Zea mays] GI:2687358;
contains Pfam profile PF00785: PAC motif
Length = 397
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/57 (24%), Positives = 20/57 (35%)
Frame = -1
Query: 468 QSRRFRVFCQKSSFGFRDWQRCSQSRCHQRTSKSFSGAQAFQRFCDVFVKFIVFQGR 298
Q R V C G DW++C S S+ +A + V + GR
Sbjct: 180 QDRALPVECDDDEQGLEDWEQCEASE-----SEKLKATEAINNVLSILVHYSELSGR 231
>At2g02710.1 68415.m00211 PAC motif-containing protein similar to
nonphototropic hypocotyl 1 [Zea mays] GI:2687358;
contains Pfam profile PF00785: PAC motif
Length = 399
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/57 (24%), Positives = 20/57 (35%)
Frame = -1
Query: 468 QSRRFRVFCQKSSFGFRDWQRCSQSRCHQRTSKSFSGAQAFQRFCDVFVKFIVFQGR 298
Q R V C G DW++C S S+ +A + V + GR
Sbjct: 180 QDRALPVECDDDEQGLEDWEQCEASE-----SEKLKATEAINNVLSILVHYSELSGR 231
>At1g62810.1 68414.m07091 copper amine oxidase, putative similar to
copper amine oxidase [Cicer arietinum]
gi|3819099|emb|CAA08855
Length = 712
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -2
Query: 536 RCAFLCVLRFLQSTSGAADFRVTNPDAFEYFVRNPHSVFEIGN 408
R ++L V +++ T A +++ D +E+ + NP+ +GN
Sbjct: 536 RKSYLKVKKYIAKTEKDAQIKLSLYDPYEFHIVNPNRKSRVGN 578
>At1g50270.1 68414.m05636 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 596
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 458 RRDWSLGSQQRQTCSAGNEERTEKRIARRLEDNSLTKWTAL 580
RRD L R+ C+A + R +R+ +L+ S+ W +L
Sbjct: 33 RRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSL 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,758,124
Number of Sequences: 28952
Number of extensions: 249593
Number of successful extensions: 824
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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