Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0560
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    27   3.1  
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|...    27   3.1  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    26   4.1  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   4.1  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   5.5  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   5.5  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    25   7.2  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    25   7.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.5  

>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 390 RPTYS-SMLKVVTYLKDNFPSLWNSINRLYMPRGVPPV 280
           R  YS S++++   LK ++  L  + +  + PRG PPV
Sbjct: 410 RSLYSPSLMQMQQSLKSDYEGLGRTFDPRFAPRGSPPV 447


>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
           Snu23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +2

Query: 524 RNSYRRLAECICSSEGSVRTVTSRSTNRA---PRWCLGRE*RPWPTT 655
           RN   +  E + +   + R    +  N+    PRW  GR  RPW  T
Sbjct: 9   RNGNSKKNEVVITGGRTQRIDFEKDVNKTTILPRWSFGRPKRPWSCT 55


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 286 TGGQAQHEVSSGPGANCVIRWR 221
           T G+  H+  SGP    +IRWR
Sbjct: 85  TSGKKTHQPYSGPCVPTIIRWR 106


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 290 SHRWAGPARSVFRTRSELRDPLENES 213
           S+  +G A SV R  S L+D LEN S
Sbjct: 786 SYVLSGAAMSVIRDESSLKDKLENAS 811


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 422  YMWNEFFKHIDIEPSNAHVLDGNASDLV 505
            + +N+  K+ D+   +AHV+   A+DLV
Sbjct: 1015 HRYNDIVKYADLTTQDAHVIKKIAADLV 1042


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 193 MLASSRIIRRIVRDYFHT-LAVTISYY 116
           ++A  RI RRI +DY H  L+  I Y+
Sbjct: 165 IIAGERIARRIRQDYLHAILSQNIGYF 191


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 365 FNMDEYVGLPRDHPESYHYY--MWNEFFKHIDIEPSN-AHVLDGNASDLVLSVNALR 526
           F +  +VG+    P S HY+    N++F ++D   ++ AH     AS+       LR
Sbjct: 201 FEIRSFVGITGGRPRSAHYFYARQNQYFFYLDPHCTHFAHTTTQPASEETFHSATLR 257


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 365 FNMDEYVGLPRDHPESY 415
           ++ +  + LPRDHPE Y
Sbjct: 82  YDTERKISLPRDHPEYY 98


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 300  PRGVPPVGRPSTKCLPDPE 244
            P G+PPV +PS    P P+
Sbjct: 1088 PSGIPPVPKPSVAAPPVPK 1106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,731
Number of Sequences: 5004
Number of extensions: 56468
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)