Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0560
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0183 + 15019304-15020113,15021597-15021878 29 2.4
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007... 29 2.4
09_06_0039 - 20423829-20424308,20424664-20424729,20425969-204261... 29 3.2
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188... 29 4.3
08_02_1479 + 27390852-27391059,27392017-27392138,27392227-273923... 28 5.6
01_06_0388 + 28927211-28928467 28 7.5
12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339... 27 9.9
08_02_0897 - 22362136-22363698 27 9.9
05_05_0084 - 22262007-22262300,22262435-22262707,22263418-222634... 27 9.9
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637... 27 9.9
>12_02_0183 + 15019304-15020113,15021597-15021878
Length = 363
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2
Query: 654 VVGQGLHSRPRHQRGARFVERDVTVRTDPSDEQMHSASLLYE 529
++G + P +G + + D+ V T PSD++ +LY+
Sbjct: 278 ILGNCKKAIPTRDKGEKVIIMDIVVGTGPSDQKHRDVQILYD 319
>03_06_0603 +
34999083-34999703,35000092-35000177,35000400-35000796,
35000906-35001154,35001522-35001749,35002524-35002973,
35003848-35003961,35004171-35004216,35004408-35004574
Length = 785
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = -1
Query: 301 AEGRPTGGQAQHEVSSGPGANC---VIRWRTNLAAQSATMLASSRIIRRIVRDY 149
AE GG + ++GPG C V+ WR S + A + R++ DY
Sbjct: 68 AEYHGGGGGRGGKSAAGPGVQCDVDVVSWRERRVFASVAVAADVDTVWRVITDY 121
>09_06_0039 -
20423829-20424308,20424664-20424729,20425969-20426104,
20426222-20426415
Length = 291
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 568 GIGPDGHIAFNEPGSSLVSRTR 633
G+GPDGHIA PG LV+ +
Sbjct: 186 GMGPDGHIASLFPGHPLVNENK 207
>10_01_0167 +
1876793-1877402,1877423-1877642,1877760-1879534,
1880019-1880199,1881313-1881529
Length = 1000
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 304 HAEGRPTGGQAQHEVSSGPGANCVIRWRTNLAAQSAT 194
H +G P GG+A + GP A+ +++ N S+T
Sbjct: 868 HGKGSPKGGRATEDYGHGPSASRRLQYGFNKVLASST 904
>08_02_1479 +
27390852-27391059,27392017-27392138,27392227-27392350,
27392641-27392702,27392778-27392859,27393338-27393410,
27397092-27397227,27397337-27397386,27397542-27397590,
27398352-27398831
Length = 461
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 556 LFIGGIGPDGHIAFNEPGSSLVSRTRVKTLAY 651
L + G+GPDGH+A PG +V+ +K ++Y
Sbjct: 352 LMLLGMGPDGHVASLFPGHPVVNE-NLKWVSY 382
>01_06_0388 + 28927211-28928467
Length = 418
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 482 DGNASDLVLSVNALRNSYRRLAECICSSEGSVRTVTSRSTNRAPRWCLG 628
+G L+ ++ + S AEC+ EG+VR +T S + +CLG
Sbjct: 345 EGKGRVLIEALETINESSGGDAECV-DPEGTVRLITVASIGQQEVFCLG 392
>12_02_1015 +
25331667-25332169,25333305-25333406,25333775-25333919,
25334002-25334186,25334297-25334401,25334507-25334604,
25334686-25334924,25335030-25335123,25335190-25335275,
25335579-25335677,25335804-25335869
Length = 573
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 332 PCGTLSTVCTCRGASHRWAGPARSVFRTRSELR 234
P G ++ CRG W G AR V+R ELR
Sbjct: 112 PRGVAASAAVCRG----WRGCARRVWRAADELR 140
>08_02_0897 - 22362136-22363698
Length = 520
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 636 HSRPRHQRGARFVERD-VTVRTDPSDEQMHSASLLYEFLKALTLSTKSDALPSSTCALLG 460
HS R + G FV RD V V D +D+ L +KA T + SS+ +
Sbjct: 268 HSERRRREGEAFVARDMVDVLMDLADDPSLEIKLGRVGVKAFTQDLIAGGTESSSVTVEW 327
Query: 459 SMSMCLKN 436
++S KN
Sbjct: 328 ALSELFKN 335
>05_05_0084 -
22262007-22262300,22262435-22262707,22263418-22263468,
22263944-22264035,22264715-22264724
Length = 239
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -2
Query: 390 RPTYSSMLKVVTYLKDNFPSLWNSINRLYMPRGVPPVGRPSTKC 259
R + L V YLK + P+ W ++ +LY +G + C
Sbjct: 57 RAKKGTKLSVENYLKPDIPATWQAMEKLYDSGKARAIGVSNFSC 100
>04_04_0687 -
27262742-27262784,27263429-27263584,27263698-27263783,
27263881-27264188,27265337-27265455,27265989-27266075,
27266440-27266546
Length = 301
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 317 STVCTCRGASHRWAGPARSVFRTRSELRDP 228
+T TC G + W G + + R ++R+P
Sbjct: 225 ATATTCHGPNSWWKGTEKGKMKVRRKMREP 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,791,082
Number of Sequences: 37544
Number of extensions: 421640
Number of successful extensions: 1329
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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