Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0560
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   6e-31
SB_16349| Best HMM Match : Glucosamine_iso (HMM E-Value=0.14)          54   1e-07
SB_21211| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               28   5.8  

>SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score =  131 bits (316), Expect = 6e-31
 Identities = 55/72 (76%), Positives = 63/72 (87%)
 Frame = +2

Query: 302 MYKRLIEFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFFKHIDIEPSNAHVL 481
           MY++LIEF+K G+LSFKYV TFNMDEYVGLP+DHPESYH YMW+ FFKHIDI P NAH+L
Sbjct: 51  MYRKLIEFYKRGELSFKYVKTFNMDEYVGLPKDHPESYHSYMWDNFFKHIDILPENAHIL 110

Query: 482 DGNASDLVLSVN 517
           DGNA+DLV   N
Sbjct: 111 DGNAADLVQECN 122



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/46 (76%), Positives = 41/46 (89%)
 Frame = +1

Query: 511 CQRFEKLIQEAGGVHLFIGGIGPDGHIAFNEPGSSLVSRTRVKTLA 648
           C +FE+ I+ AGGV +F+GGIGPDGHIAFNEPGSSL SRTRVK+LA
Sbjct: 121 CNQFEEKIKAAGGVDVFVGGIGPDGHIAFNEPGSSLASRTRVKSLA 166



 Score = 35.5 bits (78), Expect = 0.038
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +3

Query: 162 MRLIILEDASIVADWAARFVLQRITQFAPGPED 260
           MRL+I   +  V++WAA++V  RI Q  PGP++
Sbjct: 1   MRLVIQNTSVEVSEWAAKYVRNRILQKNPGPDN 33


>SB_16349| Best HMM Match : Glucosamine_iso (HMM E-Value=0.14)
          Length = 62

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +1

Query: 571 IGPDGHIAFNEPGSSLVSRTRVKTLA 648
           IGPDGHIAFNEPGSSL SRTRVK+LA
Sbjct: 2   IGPDGHIAFNEPGSSLASRTRVKSLA 27


>SB_21211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 88  QEVESVRILRNKILSPLTCESNPE 159
           QE+++VR  +NK LS L CES  E
Sbjct: 72  QELQNVRDRKNKTLSQLLCESREE 95


>SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1291

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 286 WDAPRHVQTVDRVPQGREVIFQICDHFQHGRVC 384
           W AP  VQ   R   G +    +CDH    RVC
Sbjct: 669 WKAPLDVQIKARCVVGDDYPEPVCDHLLQRRVC 701


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,115,701
Number of Sequences: 59808
Number of extensions: 453883
Number of successful extensions: 1143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)