Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0560
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical pr...   107   7e-24
AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical ...    29   3.8  
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    28   5.0  
U23515-4|AAU87816.1|  333|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U23159-1|AAA85857.1| 1005|Caenorhabditis elegans bifunctional gl...    27   8.8  
AF026209-2|AAN84883.1|  863|Caenorhabditis elegans Gex interacti...    27   8.8  
AF026209-1|AAB71278.2|  968|Caenorhabditis elegans Gex interacti...    27   8.8  
AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical
           protein T03F6.3 protein.
          Length = 267

 Score =  107 bits (257), Expect = 7e-24
 Identities = 46/83 (55%), Positives = 59/83 (71%)
 Frame = +2

Query: 251 SGRHFVXXXXXXXXXXXMYKRLIEFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMW 430
           +G++ V           MYK+LIEF+  G +SF+ V TFNMDEYV LPRDH ESYH +M+
Sbjct: 30  NGKYLVLGLPTGSTPLGMYKKLIEFYNAGVISFEKVKTFNMDEYVDLPRDHTESYHSFMF 89

Query: 431 NEFFKHIDIEPSNAHVLDGNASD 499
           + FF+HIDI P+N H+LDGN SD
Sbjct: 90  DNFFRHIDINPANIHILDGNTSD 112



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 34/48 (70%), Positives = 42/48 (87%)
 Frame = +1

Query: 511 CQRFEKLIQEAGGVHLFIGGIGPDGHIAFNEPGSSLVSRTRVKTLAYD 654
           C+ +E+ I+E+GG+ LF+GGIGPDGHIAFNEPGSSL SRTR+KTL  D
Sbjct: 117 CEEYERKIKESGGIDLFVGGIGPDGHIAFNEPGSSLASRTRIKTLNED 164



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = +3

Query: 162 MRLIILEDASIVADWAARFVLQRITQ 239
           M+LII E+A  VA++AAR+V+ +I +
Sbjct: 1   MKLIIEENADKVAEFAARYVVTKINE 26


>AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.2 protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 491 ASDLVLSVNALRNSYRRLA-ECICSSEGSVRTVTSRSTNRAPRWC 622
           A DL  + N + N Y R   EC  + +G+   V +R+ N  PR C
Sbjct: 77  ADDLKCATNCVENYYNRYKHECAGTGQGACE-VMARNHNGGPRGC 120


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 344 ITSLPCGTLSTVCTCRGASHRWAGPARSVFRTRSELRDP-LENESGGP 204
           +T+ PCG  + V      S R  GP+ S  R  S   DP   N+ G P
Sbjct: 817 VTNNPCGGQNAVSRPSSKSPRPGGPSTSSHRHGSHANDPRSHNKPGTP 864


>U23515-4|AAU87816.1|  333|Caenorhabditis elegans Hypothetical
           protein R144.12 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 393 GRPTYSSMLKVVTYLKDNFPSLWNSINRLYMPRGV 289
           G+  Y  MLK    ++D  PSLWN I      RG+
Sbjct: 270 GKEYYWKMLKRNRIMRDIKPSLWNQITATGDIRGI 304


>U23159-1|AAA85857.1| 1005|Caenorhabditis elegans bifunctional
           glyoxylate cycle proteinprotein.
          Length = 1005

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 316 QPFVHAEGRPTGGQAQHEVSSGPGANCVIRWRTNLAAQSA 197
           +PFV A G  TG QA   V +G  A  +  W+    A SA
Sbjct: 100 EPFVPALGAQTGNQAVQMVRAGLKAIYLSGWQVAADANSA 139


>AF026209-2|AAN84883.1|  863|Caenorhabditis elegans Gex interacting
           protein protein7, isoform b protein.
          Length = 863

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 316 QPFVHAEGRPTGGQAQHEVSSGPGANCVIRWRTNLAAQSA 197
           +PFV A G  TG QA   V +G  A  +  W+    A SA
Sbjct: 60  EPFVPALGAQTGNQAVQMVRAGLKAIYLSGWQVAADANSA 99


>AF026209-1|AAB71278.2|  968|Caenorhabditis elegans Gex interacting
           protein protein7, isoform a protein.
          Length = 968

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 316 QPFVHAEGRPTGGQAQHEVSSGPGANCVIRWRTNLAAQSA 197
           +PFV A G  TG QA   V +G  A  +  W+    A SA
Sbjct: 60  EPFVPALGAQTGNQAVQMVRAGLKAIYLSGWQVAADANSA 99


>AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical
           protein Y20F4.2 protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 188 QHRCRLGRQIRSPADHAVRSGSG 256
           QHR   G + RSP DH + S SG
Sbjct: 100 QHRPIQGHRSRSPEDHMIGSASG 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,356,694
Number of Sequences: 27780
Number of extensions: 335722
Number of successful extensions: 1165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)