Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0560
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01610.2 68417.m00211 cathepsin B-like cysteine protease, put...    30   1.5  
At4g01610.1 68417.m00210 cathepsin B-like cysteine protease, put...    30   1.5  
At1g02305.1 68414.m00175 cathepsin B-like cysteine protease, put...    30   1.5  
At5g13380.1 68418.m01541 auxin-responsive GH3 family protein sim...    29   2.7  
At5g13370.1 68418.m01540 auxin-responsive GH3 family protein sim...    29   2.7  
At5g24400.1 68418.m02876 glucosamine/galactosamine-6-phosphate i...    28   4.7  
At5g63370.1 68418.m07954 protein kinase family protein contains ...    28   6.2  
At5g43040.1 68418.m05254 DC1 domain-containing protein contains ...    28   6.2  
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P...    28   6.2  
At1g55960.1 68414.m06418 expressed protein weak similarity to SP...    28   6.2  
At3g46930.1 68416.m05093 protein kinase family protein contains ...    27   8.2  

>At4g01610.2 68417.m00211 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 263 SVFRTRSELRDPL-ENESGGPVGNDAGIFENYKTHSSGLLSHVSGDNI 123
           S +  +S  +D + E    GPV     ++E++  + SG+  H++G NI
Sbjct: 236 STYTVKSNPQDIMAEVYKNGPVEVSFTVYEDFAHYKSGVYKHITGSNI 283


>At4g01610.1 68417.m00210 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 263 SVFRTRSELRDPL-ENESGGPVGNDAGIFENYKTHSSGLLSHVSGDNI 123
           S +  +S  +D + E    GPV     ++E++  + SG+  H++G NI
Sbjct: 236 STYTVKSNPQDIMAEVYKNGPVEVSFTVYEDFAHYKSGVYKHITGSNI 283


>At1g02305.1 68414.m00175 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           [Nicotiana rustica] GI:609175; contains Pfam profile
           PF00112: Papain family cysteine protease
          Length = 362

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 263 SVFRTRSELRDPL-ENESGGPVGNDAGIFENYKTHSSGLLSHVSGDNI 123
           S ++ RS   D + E    GPV     ++E++  + SG+  H++G NI
Sbjct: 239 SAYKVRSHPDDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHITGTNI 286


>At5g13380.1 68418.m01541 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 624

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 393 GRPTYSSMLKVVTYLKDNFPSLWNSI 316
           G P  SS LKV+ +L+D++P L ++I
Sbjct: 246 GAPYASSFLKVIKFLEDHWPELCSNI 271


>At5g13370.1 68418.m01540 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 393 GRPTYSSMLKVVTYLKDNFPSLWNSI 316
           G P  SS LKV+ +L+D++P L ++I
Sbjct: 216 GAPFASSFLKVIKFLEDHWPELCSNI 241


>At5g24400.1 68418.m02876 glucosamine/galactosamine-6-phosphate
           isomerase family protein low similarity to SP|O95336
           6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) {Homo
           sapiens}; contains Pfam profile PF01182:
           Glucosamine-6-phosphate
           isomerase/6-phosphogluconolactonase
          Length = 325

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 556 LFIGGIGPDGHIAFNEPGSSLVSRTR 633
           L + G+GPDGH+A   PG  L + ++
Sbjct: 223 LMLLGMGPDGHVASLFPGHGLCNESK 248


>At5g63370.1 68418.m07954 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 612

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 209 RQIRSPADHAVRSGSGRH 262
           RQI+ P+DH +R   GRH
Sbjct: 41  RQIKRPSDHDLRRNDGRH 58


>At5g43040.1 68418.m05254 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 551

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = -2

Query: 654 VVGQGLHSRPRHQRGARFVERDVTVRTDPSDEQMHSASLLYEFLKALTLSTKSDALPSST 475
           VVG+GL     H+   R +  D  +  D S +Q H   +L  F  A  + T  D +   T
Sbjct: 248 VVGEGLIKHFTHEHNLRLINED-DILYDKS-KQCHGC-VLPIFFNACYICTHCDFILHET 304

Query: 474 CALL 463
           CA L
Sbjct: 305 CANL 308


>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 681

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +2

Query: 335 GKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFFKHIDIEPSNAHVLDGNASDLVLSV 514
           G +SF Y +T  + +  GL       +   + +EF +H +   +  HV+DG+A    L  
Sbjct: 418 GVVSFDYDSTMVVADLPGLLEGAHRGFG--LGHEFLRHTERCSALVHVVDGSAPQPELEF 475

Query: 515 NALR 526
            A+R
Sbjct: 476 EAVR 479


>At1g55960.1 68414.m06418 expressed protein weak similarity to
           SP|P53808 Phosphatidylcholine transfer protein (PC-TP)
           {Mus musculus}
          Length = 403

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 23/69 (33%), Positives = 29/69 (42%)
 Frame = -3

Query: 344 ITSLPCGTLSTVCTCRGASHRWAGPARSVFRTRSELRDPLENESGGPVGNDAGIFENYKT 165
           I S  C   + +C     SHR  GP  S      E+  P E E+G    N  G  E   +
Sbjct: 275 IWSYVCKMENALCKYIATSHRTQGPILSAVTLMKEV--PSELETG--TDNVTGSMET--S 328

Query: 164 HSSGLLSHV 138
              G+LSHV
Sbjct: 329 SGEGVLSHV 337


>At3g46930.1 68416.m05093 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 475

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 600 VERDVTVRTDPSDEQMHSASLLYEFLKALTLSTKSDALPSSTC 472
           +ER  + +TD   E      +L  F K+LT   K + LPS  C
Sbjct: 394 IERCWSSQTDKRPEFWQIVKVLEHFKKSLTSEGKLNLLPSQIC 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,481,624
Number of Sequences: 28952
Number of extensions: 312433
Number of successful extensions: 944
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)