Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0559
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    28   1.2  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    27   2.7  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   3.6  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   4.8  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.3  
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    25   8.4  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    25   8.4  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   8.4  

>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = +1

Query: 298 NRIIIHPNYNRRTADSDLCILRSNSNIAYNNNVRPINIAGA----NYNLGDNQVVWAAGW 465
           N  +    +N+ T +S      SN+N ++NNN +  +I GA     +    N   ++   
Sbjct: 170 NSTVTSNQFNKPTQNSPFNSF-SNNNNSFNNNQQANDIFGAPTTSAFTSQLNASPFSQNT 228

Query: 466 GATSLGGSNSEQLRPSRSGPS 528
            + S  GSN  Q  PS  G S
Sbjct: 229 SSNSFTGSNPVQNNPSSFGSS 249


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -1

Query: 557 SVTLDAGILIDGPDLDGRSCSELDPPSDVAPQPAAQTTWLSPRL*LAPAILIG 399
           SV   A     G ++ G + +E+D P    P    Q  W      +   ILIG
Sbjct: 268 SVFTTAAFSFSGTEVIGLAAAEVDNPQKALPHAVKQVFWRIAIFYVVSLILIG 320


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
            subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 373  WNYCVRCRGHC-QQYVCYSWDE**FCSRYAQH 281
            W  C RC+G   Q  +C S D   F  R A+H
Sbjct: 1037 WTQCQRCQGSMHQDVICTSRDCPIFYMRIAEH 1068


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 164  SCGGNILNQRSILSAAHCPYGDA 232
            +  GN+LN  +  S ++CPY  A
Sbjct: 1451 TAAGNLLNPNATTSCSYCPYQTA 1473


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 137 TWNWNQWWQSCGG 175
           T N+  WW SCGG
Sbjct: 114 TVNYPTWWDSCGG 126


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +2

Query: 476 RSEGLIRSNSVRP----GLDHQSECLRPTLQTH*PC 571
           R   + R NS R     G +H  +CL P+ +T  PC
Sbjct: 336 RRTTISRDNSTRSTWGIGSEHDMQCLPPSYETMGPC 371


>SPBC119.04 |mei3||meiosis inducing protein Mei3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 516 PGRTELLRIRPSERCSTPTSSPNNLVITKIVIGTSNINRTN 394
           P RT   R   S R ST +SS N    T    GT+ I+ T+
Sbjct: 20  PNRTNTARRSTSPRTSTGSSSTNTNTKTVDHAGTTFISSTS 60


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 370 NYCVRCRGHCQQYVCYSWDE 311
           +YC+R  G+C  Y  Y WD+
Sbjct: 173 DYCLR--GYCTVYKYYKWDK 190


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 256 GSTFANSGGVVHNVNRIIIHPNYNRR 333
           GS   N GG++   N  I HP    R
Sbjct: 175 GSDMGNDGGMIPTFNHPIFHPENRSR 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,314
Number of Sequences: 5004
Number of extensions: 57722
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)