Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0559
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0671 - 24164490-24164544,24164920-24165086,24165787-241659... 30 1.2
01_05_0302 + 20637139-20637291,20637390-20637476,20637609-206378... 29 2.1
09_02_0234 - 6116931-6117052,6117549-6118369,6118573-6118601,611... 29 2.8
06_01_1145 - 9575173-9575553,9575712-9575858,9575971-9576024,957... 29 2.8
03_02_0700 - 10517754-10519100 29 3.7
01_05_0612 - 23652121-23652400,23653031-23654427 29 3.7
04_03_1008 + 21691299-21691413,21691524-21691863,21692344-216924... 28 6.5
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 27 8.6
03_02_0996 - 13082540-13082818,13083107-13083221,13084135-130842... 27 8.6
03_02_0741 - 10857656-10857844,10858315-10858848,10859516-108598... 27 8.6
>01_05_0671 -
24164490-24164544,24164920-24165086,24165787-24165941,
24166291-24166458,24167471-24167552
Length = 208
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = +1
Query: 4 YAVYHYFVGPW-AC---CCGGCSYQPTKDYWWLHD---QH*PVSRYSC 126
+ +YH+ GPW C C GG Y+ Y L D +H PV SC
Sbjct: 83 HEIYHWVAGPWMKCSSPCDGGVRYRDVACYGNLSDATIKHYPVDDASC 130
>01_05_0302 +
20637139-20637291,20637390-20637476,20637609-20637836,
20638014-20638184,20638843-20638896,20639028-20639174,
20639326-20639706
Length = 406
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 62 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 178
TNPQ +IGGS + ++ Y + Y +++ W GGN
Sbjct: 251 TNPQFVIGGSLSPVSIY---GSTQYEYDYLVWKDPAGGN 286
>09_02_0234 -
6116931-6117052,6117549-6118369,6118573-6118601,
6118711-6119020,6119469-6119476,6120104-6120232,
6120341-6120445
Length = 507
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 587 HVSGDSTVNGSVTL-DAGILIDGPDLDGRSCSELDPPSD 474
H GD+ ++ T D +++ D+D SC DPPS+
Sbjct: 323 HCEGDTDIDDLYTPEDVDVVLGVADMDDMSCELSDPPSE 361
>06_01_1145 -
9575173-9575553,9575712-9575858,9575971-9576024,
9576692-9576862,9577004-9577231,9577392-9577478,
9577600-9577761
Length = 409
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 62 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 178
TNPQ +IGGS + ++ Y Y +++ W GGN
Sbjct: 254 TNPQFVIGGSISPVSTY---GDTQYEYDYLVWKDPAGGN 289
>03_02_0700 - 10517754-10519100
Length = 448
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 424 YNLGDNQVVWAAGWGATSLGGSNSEQLRPSRSGP 525
+N GDNQ++ G+ SLG +++R S P
Sbjct: 393 FNFGDNQILQMYGFTHKSLGSRKVKRIRNETSNP 426
>01_05_0612 - 23652121-23652400,23653031-23654427
Length = 558
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 256 GSTFANSGGVVHNVNRII--IHPNYNRRTADSD 348
G T A S ++R++ +HPN NR+T DSD
Sbjct: 64 GITVAFSAAAPPAISRLLFALHPNKNRQTTDSD 96
>04_03_1008 +
21691299-21691413,21691524-21691863,21692344-21692425,
21692905-21693060,21694171-21694344,21694485-21694556,
21695289-21695360,21695473-21695591,21695692-21695777,
21695867-21695919,21696058-21696150
Length = 453
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 536 ILIDGPDLDGRSCSELDPPSDVAPQPAAQTTWLSP 432
++ID DG C +L+P + V P A W+SP
Sbjct: 381 VMIDALSPDGPGCKKLEPSTAV---PFAAKVWVSP 412
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 525 WSRPGRTELLRIRPSERCSTP 463
++R G T LL+ P+ RC+TP
Sbjct: 11 YTRKGLTTLLQTNPNSRCTTP 31
>03_02_0996 -
13082540-13082818,13083107-13083221,13084135-13084235,
13084890-13085117,13085789-13086106,13086200-13086484,
13086566-13086913
Length = 557
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 358 LRSNSNIAYNNNVRPINIAGANYNLGDNQVVWAAGWGATSLGGSNSEQLRPSR 516
L S +NN V +I G+N L +N ++ A +G SL N Q SR
Sbjct: 219 LLSGLEHCHNNGVLHRDIKGSNLLLDNNGMLKIADFGLASLFDPNKNQPMTSR 271
>03_02_0741 -
10857656-10857844,10858315-10858848,10859516-10859824,
10860521-10860622,10861446-10861613,10862734-10862847,
10863003-10863107,10863206-10863336,10863680-10863804,
10863890-10864061,10864411-10864505,10864771-10864841,
10864923-10865009,10865119-10865184,10865401-10865499,
10866631-10866672,10866757-10866822,10866910-10867101,
10867224-10867289,10868473-10868811
Length = 1023
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 171 PQDCHH*FQFHVYNKAAIPGYWLMLVVEPPIILCGLV 61
P+DCH + ++ PG+++ + V+ P +L LV
Sbjct: 108 PEDCHTVIALPLPHQPLFPGFFMAMSVKDPKLLKALV 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,303,847
Number of Sequences: 37544
Number of extensions: 429693
Number of successful extensions: 1269
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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