Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0559
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    39   0.003
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    33   0.20 
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical...    32   0.27 
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    31   0.62 
U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like pr...    29   3.3  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cycl...    29   3.3  
U67949-4|AAB07562.2|  284|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AF045642-6|AAC02590.1|  632|Caenorhabditis elegans Hypothetical ...    28   4.4  
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF047652-5|AAC04391.2|  449|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = +1

Query: 235 RPLAYSCGSTFANSG-GVVHNVNRIIIHPNYNRRTADS-DLCILRSNSNIAYNNNVRPIN 408
           RP +YS       SG G  H V  + IHP YN     S D  I+R +  +  +   RPI 
Sbjct: 106 RPTSYSVRVGGHRSGSGSPHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPIC 165

Query: 409 IAGANYNLGDNQVVWAAGWGATSLGGSNS 495
           +   +    +N++    GWG+T  G S S
Sbjct: 166 L--PSLPAVENRLCVVTGWGSTIEGSSLS 192



 Score = 34.3 bits (75), Expect = 0.067
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = +2

Query: 62  TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHC 217
           T   R+IGGS ++ + +P    LL     ++    CGG++++   +L+AAHC
Sbjct: 53  TLDHRLIGGSESSPHSWPWTVQLLSRLGHHR----CGGSLIDPNFVLTAAHC 100


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +1

Query: 292 NVNRIIIHPNYNRRTADSDLCILRSNSNIAYNNNVRPI 405
           +V    IH  YN +TAD+D+ +LR +S+++    ++P+
Sbjct: 106 SVKEAYIHSGYNNQTADNDIALLRISSDLS-KLGIKPV 142


>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
           protein Y105C5B.21a protein.
          Length = 1254

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 312 NDNSVHVMHNTPTVGKGGTTR-IRQRPVASPY 220
           ND+ VH M     V K  TTR +RQ PV SPY
Sbjct: 115 NDDGVHQMQKVTRVTKVTTTRSVRQVPVQSPY 146


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 74  RIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHC 217
           R++GG  T    +P  AAL    N       CG +IL++  +++AAHC
Sbjct: 26  RVVGGFETVPGAFPWTAALR---NKATKAHHCGASILDKTHLITAAHC 70


>U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like
           protease protein 6 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 101 INQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDATGRWRIRVV 259
           IN Y  +  +  TW+     + C G + + R IL+A HC        W   V+
Sbjct: 58  INTYTNVKNIDETWS-----KHCSGTLTSPRHILTATHCAATYTETEWNGTVI 105


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/86 (24%), Positives = 31/86 (36%)
 Frame = -3

Query: 471 STPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVHV 292
           +TPT++P N   +     T+ +N T+      V         T +ST+        +   
Sbjct: 647 TTPTTAPVNPT-SSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQT 705

Query: 291 MHNTPTVGKGGTTRIRQRPVASPYGQ 214
              TP V    T     RPV  P  Q
Sbjct: 706 TPTTPVVTTPSTITPTTRPVTQPASQ 731


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/86 (24%), Positives = 31/86 (36%)
 Frame = -3

Query: 471 STPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVHV 292
           +TPT++P N   +     T+ +N T+      V         T +ST+        +   
Sbjct: 703 TTPTTAPVNPT-SSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQT 761

Query: 291 MHNTPTVGKGGTTRIRQRPVASPYGQ 214
              TP V    T     RPV  P  Q
Sbjct: 762 TPTTPVVTTPSTITPTTRPVTQPASQ 787


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/86 (24%), Positives = 31/86 (36%)
 Frame = -3

Query: 471 STPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVHV 292
           +TPT++P N   +     T+ +N T+      V         T +ST+        +   
Sbjct: 526 TTPTTAPVNPT-SSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQT 584

Query: 291 MHNTPTVGKGGTTRIRQRPVASPYGQ 214
              TP V    T     RPV  P  Q
Sbjct: 585 TPTTPVVTTPSTITPTTRPVTQPASQ 610


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
 Frame = -3

Query: 519 RPGRTELLRIRPSE---RCSTPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAE 349
           + G T L+ IR       C    S P+      + +     N+TN V+   V +TA  A+
Sbjct: 359 KEGSTSLVTIRDKVLQVNCRLHKSMPSEEQFLSVQMNVRENNKTNQVMSDVVVVTAPPAQ 418

Query: 348 VTVSSTSVIVGMNDNSVHVMH 286
                +  I+G++      +H
Sbjct: 419 TNPKFSLKILGLDSTEADTVH 439


>AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cyclase
            protein 2 protein.
          Length = 1080

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 325  NRRTADSDLCILRSNSNIAYNNNVRPINIAGANYNL 432
            N   AD D   L   ++  YNNN+R  N+A  N NL
Sbjct: 913  NESEADYDDIYLEKQNSGKYNNNIRHGNMAFRNANL 948


>U67949-4|AAB07562.2|  284|Caenorhabditis elegans Hypothetical
           protein F55A4.4 protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 502 LRPSRS-GPSIRMPASNVTDPLTVLSPL 582
           + P+RS GP  +       DPLTVLSPL
Sbjct: 11  INPARSQGPKCKGEQKAAVDPLTVLSPL 38


>AF045642-6|AAC02590.1|  632|Caenorhabditis elegans Hypothetical
           protein C17H12.12 protein.
          Length = 632

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +1

Query: 364 SNSNIAYNNNVRPINIAGANYNLGDNQVVWAAGWGATSLGGSNSEQLRPSRSGPS 528
           S+SN  YN N+R    +GAN N        A    + + GGS+ +Q R + SG S
Sbjct: 580 SSSNSVYNRNMRDDGTSGANGN------AEAGPSTSYASGGSSKKQPRETGSGSS 628


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
            C37C3.6b protein.
          Length = 2167

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
 Frame = -2

Query: 343  CQQYVCYSWDE**FCSRYAQHPHCW---QRWNHTNTPTACSVTVWTVSG 206
            C++  C  W     C   A+H  C     RW H    + C + +WT  G
Sbjct: 1777 CER-ACGKWRNVAVCELPAEHGDCQLAIPRWYHDPKTSQCQMMMWTGCG 1824


>AF047652-5|AAC04391.2|  449|Caenorhabditis elegans Hypothetical
           protein C34H4.2 protein.
          Length = 449

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 454 AAGWGATSLGGSNSEQLRPSRSGPSIRMPASNVTDP 561
           A G  + S  G++   + P  SGP+  MPA   T P
Sbjct: 382 APGSSSASPTGTSGSSVSPPASGPTTSMPAQASTTP 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,848,369
Number of Sequences: 27780
Number of extensions: 341008
Number of successful extensions: 1024
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)