Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0558
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    38   0.002
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    29   0.51 
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    26   4.8  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   6.3  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   6.3  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +3

Query: 6   NKQQTGFYRVNYD-DYTWNLIVIALRGPQRTQIHEYNRAQIVNDVFQFARSGLMTYNRAF 182
           N +Q+G YRVNY  D+   L  IA+  P    + +  RA ++ DV   +R+G    +   
Sbjct: 544 NSEQSGIYRVNYSADHLKKLSQIAVEKPDYLSVED--RAGLIADVASLSRAGYGKVSSTL 601

Query: 183 NILSFLENETEYAPWVAAITGFN 251
           +++   ++E  +  +   +   N
Sbjct: 602 DLIKTWKDEPNFVVFAEMLARLN 624


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -2

Query: 523 ERCNKPVAIVHW--YFLSVNTKSLELSSSCSTTGCHVDVTK*RSQLISEVSPHEGLVGNW 350
           ER    V +  W  +  ++N K++ +   C+TT C  ++ K  ++ ++   P +    + 
Sbjct: 615 ERDAHVVKVKEWADFVPALNKKNIVMIPWCNTTECEKEIKKNSARQVNGDEPEDEKAPSM 674

Query: 349 RVGELVHQIRRPTGDQIIQSG 287
               L   + +P+G+  I  G
Sbjct: 675 GAKSLCIPLEQPSGEDAIIEG 695


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = -1

Query: 251 VESSNSCDPRSVFSFILKERKNVEGSVVGHETRASELKDVVNDL 120
           +E++N+   +     + KE++ +EGS+ G E    E++++  +L
Sbjct: 111 IEAANNLKTQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKEL 154


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 512 IATLFVTALKRTSTFCTRDSKATMYTLKRFKSSG 613
           + T+F +  +  +T   RD+K TMYT   F   G
Sbjct: 633 VDTVFASETENENTVFIRDNKPTMYTPVYFAEVG 666


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 23/96 (23%), Positives = 35/96 (36%)
 Frame = +1

Query: 106  NTIEHRSLTTSFNSLALVS*PTTEPSTFFLSLRMKLNTLRGSQLLLDSTGQESSCGNRPP 285
            N  E +      + L  +  PT  PS+ +   + KL T       +DST   S       
Sbjct: 755  NASEGKERKFMISLLGKLKIPTDLPSSDYQRTKRKLETYESHGFTMDSTSL-SILAKFER 813

Query: 286  HHFE*SDRPLVFESDEPAHLLSNSQRVLHEGLPQIS 393
               +  +    FE  E   L+ N++   H G   IS
Sbjct: 814  MLLQNEEARSKFEETEEERLMENAEENEHAGAEAIS 849


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,492
Number of Sequences: 5004
Number of extensions: 55092
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)