Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0558
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 36 0.033
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 34 0.100
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 32 0.53
07_03_1106 + 24017601-24019955 31 0.93
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 30 2.2
07_03_0829 - 21792924-21793247,21793332-21793482,21793577-217938... 29 5.0
04_04_1167 + 31432731-31433769,31433893-31433941,31434363-314344... 29 5.0
01_06_0937 + 33175966-33178020 29 5.0
11_06_0080 - 19880319-19880957,19881800-19881948,19882266-198835... 28 6.6
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 28 8.7
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 35.9 bits (79), Expect = 0.033
Identities = 18/71 (25%), Positives = 38/71 (53%)
Frame = +3
Query: 6 NKQQTGFYRVNYDDYTWNLIVIALRGPQRTQIHEYNRAQIVNDVFQFARSGLMTYNRAFN 185
N QTGFYRV+YD+ + + A+ + ++ +R +++D + +G +
Sbjct: 539 NVNQTGFYRVSYDEELASRLRYAI---EANKLSAADRYGVLDDTYALCMAGKQKLVSLLH 595
Query: 186 ILSFLENETEY 218
+++ ++ETEY
Sbjct: 596 LIAAYKDETEY 606
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 34.3 bits (75), Expect = 0.100
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +3
Query: 6 NKQQTGFYRVNYDDYTWNLIVIALRGPQRTQIHEYNRAQIVNDVFQFARSGLMTYNRAFN 185
N QTGFYRV YDD L + + ++ ++ IV D + + + T
Sbjct: 474 NVDQTGFYRVKYDD---ELAAGLEKAIKANKLSLMDKIGIVEDSYSLSVARKQTLTSLLR 530
Query: 186 ILSFLENETEY 218
+L+ NE++Y
Sbjct: 531 LLNAYRNESDY 541
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 31.9 bits (69), Expect = 0.53
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 6 NKQQTGFYRVNYDDYTWNLIVIALRGPQRTQIHEYNRAQIVNDVFQFARSGLMTYNRAFN 185
N +TGFYRV YDD + AL+ + + + E IV+D + + T + +
Sbjct: 503 NIDETGFYRVKYDDELTAALRNALQAKKLSLMDEIG---IVDDAHALSIACKQTLSSLLH 559
Query: 186 ILSFLENETEYA 221
+L +E +Y+
Sbjct: 560 LLYAFRDEADYS 571
>07_03_1106 + 24017601-24019955
Length = 784
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 556 LYQRFQSHDVYTEKIQILWVLGCTPHANSLNTLLNAIVQDNII 684
+Y + + HD E IQ + +GC P + N+L+++ V+D ++
Sbjct: 287 VYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLL 329
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +3
Query: 6 NKQQTGFYRVNYDDYTWNLIVIALRGPQRTQI-----HEYNRAQIVN 131
N +TGFYRV YDD + AL+ + + + H++N AQ+V+
Sbjct: 564 NIDETGFYRVKYDDELTTALRNALQMKKLSLMDKIGRHKHNMAQLVS 610
>07_03_0829 -
21792924-21793247,21793332-21793482,21793577-21793811,
21793900-21794110,21794218-21794435,21794536-21794671,
21796732-21797517
Length = 686
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 60 LIVIALRGPQRTQIHEY-NRAQIVNDVFQFARSGLMTYNRAFNIL 191
L+ + G +R ++EY + N +F ARS + +++ FNI+
Sbjct: 423 LLGCCIHGEERMLVYEYMENKSLDNFIFDKARSAQLNWSKRFNII 467
>04_04_1167 +
31432731-31433769,31433893-31433941,31434363-31434427,
31435237-31435346,31436327-31436388,31438067-31438113,
31438148-31438272,31438651-31438764,31438852-31438979,
31439059-31439154,31439565-31439706,31439799-31439893,
31439966-31440095,31440179-31440323,31440430-31440656
Length = 857
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +1
Query: 508 VYCNALRDGTEAD---FNFLYQRFQSHDVYTEKIQILWVL---GCTPHANSLNTLLNAIV 669
VY +A R G D FN L + + + I +L+ + GC P+ + +TL+N +
Sbjct: 164 VYLSASRLGVTLDTCCFNILVKGLCQFGKFGDAISLLYEMPKQGCVPNVTTYSTLMNFLC 223
Query: 670 QDNIIIRSSRL 702
Q + ++ L
Sbjct: 224 QHGQVDKAFEL 234
>01_06_0937 + 33175966-33178020
Length = 684
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 547 FNFLYQRFQSHDVYTEKIQILWVL---GCTPHANSLNTLLNAIVQD 675
FN L F + E I+++ + GCTP+ + NTLL+ I +D
Sbjct: 495 FNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKD 540
>11_06_0080 -
19880319-19880957,19881800-19881948,19882266-19883589,
19883766-19883953,19884034-19884499
Length = 921
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 30 RVNY-DDYTWNLIVIALRGPQRTQIHEYNRAQIVNDVFQFARSGLMTY 170
+VNY DD W ++ I +R + E+N +++ + F +SG+ Y
Sbjct: 608 KVNYLDDKAW-VLAIDMRNSTLQGVAEFNAERVIALRYAFTQSGISEY 654
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = -2
Query: 445 SCSTTGCHVDVTK*RSQLISEVSPHEGLVGNWRVGELVHQIRRPTGDQIIQSGEVGGS 272
+C+TT V + + +++SE+ E L GN + GEL+ + G ++++ GG+
Sbjct: 638 NCTTTTVAVSLKRVAEKVVSELVGSESLGGN-KSGELLER-AEDMGSALVENVHFGGN 693
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,839,520
Number of Sequences: 37544
Number of extensions: 349999
Number of successful extensions: 892
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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