Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0558
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)                       73   2e-13
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   69   3e-12
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                58   1e-08
SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 48   6e-06
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 44   1e-04
SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                44   1e-04
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)                 32   0.41 
SB_46032| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_25239| Best HMM Match : PKD (HMM E-Value=5.2)                       29   5.1  
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               29   5.1  
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)                     28   8.9  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)                       28   8.9  

>SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)
          Length = 369

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 31/88 (35%), Positives = 52/88 (59%)
 Frame = +3

Query: 6   NKQQTGFYRVNYDDYTWNLIVIALRGPQRTQIHEYNRAQIVNDVFQFARSGLMTYNRAFN 185
           N +Q G+YRVNYD+  W  ++  L    +   H+ +R+ +++D F  ARSGL+    A +
Sbjct: 53  NVEQKGYYRVNYDEENWKQLIKQLNSDHKV-FHQTDRSGLIDDSFALARSGLLKLTTALD 111

Query: 186 ILSFLENETEYAPWVAAITGFNWSGIVL 269
           + S+L NE +Y PW +A+    + G +L
Sbjct: 112 LTSYLHNERDYIPWSSALGNLGFIGSML 139



 Score = 32.7 bits (71), Expect = 0.31
 Identities = 19/60 (31%), Positives = 35/60 (58%)
 Frame = +1

Query: 505 LVYCNALRDGTEADFNFLYQRFQSHDVYTEKIQILWVLGCTPHANSLNTLLNAIVQDNII 684
           +VY  A++ G E +++FL+ R+Q+    TEK +I++ L  T     L  LL+  + ++ I
Sbjct: 184 MVYHTAVKYGGEKEWDFLWGRYQNSIDPTEKSRIMYALTGTRDVWLLGRLLDYTLDESKI 243


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 31/88 (35%), Positives = 49/88 (55%)
 Frame = +3

Query: 6   NKQQTGFYRVNYDDYTWNLIVIALRGPQRTQIHEYNRAQIVNDVFQFARSGLMTYNRAFN 185
           N QQ G+YRV+YDD  W  +V  L         + +R+ ++ND F  AR+G + Y+ A +
Sbjct: 30  NYQQIGYYRVHYDDNNWRALVAQLNQDHEVFTSQ-DRSSLLNDAFSLARAGYLKYDIAMS 88

Query: 186 ILSFLENETEYAPWVAAITGFNWSGIVL 269
           +L +L+ E  Y PW  A+   ++   VL
Sbjct: 89  MLIYLDKERSYVPWKTALNALSYLKTVL 116


>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 27/83 (32%), Positives = 43/83 (51%)
 Frame = +3

Query: 6    NKQQTGFYRVNYDDYTWNLIVIALRGPQRTQIHEYNRAQIVNDVFQFARSGLMTYNRAFN 185
            N +Q GFYRVNYD   W  +   L      ++   +RA +++D F  AR+G +    A +
Sbjct: 858  NYEQHGFYRVNYDAENWERLKQQL-DTDHEKLSAADRAGLLDDAFNLARAGELPLTTALD 916

Query: 186  ILSFLENETEYAPWVAAITGFNW 254
            +  +L  E  Y PW AA++   +
Sbjct: 917  LTKYLTKEEMYVPWAAALSNMGF 939


>SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 904

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +3

Query: 6   NKQQTGFYRVNYDDYTWNLIVIALRGPQRTQIHEYNRAQIVNDVFQFARSGLMTYNRAFN 185
           N  Q GFYRVNYDD  W  +V              N  +  + V    R  ++ Y +AF 
Sbjct: 727 NFGQRGFYRVNYDDSNWESLV--------------NELEASHTV----RGKMLNYTQAFE 768

Query: 186 ILSFLENETEYAPWVAAITGFNW-SGIV 266
              +L  ETEY PW AA++  N+ SG++
Sbjct: 769 TTRYLNKETEYVPWSAALSEINFISGLL 796



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 505 LVYCNALRDGTEADFNFLYQRFQSHDVYTEKIQILWVLGCT 627
           LVY   + +G   +++F+Y++F +  V +E I +L+ L  +
Sbjct: 840 LVYYYGVANGGVREWDFVYKQFMNTRVQSEAITLLYALSAS 880


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
 Frame = +3

Query: 6   NKQQTGFYRVNYDDYTWNLIVIALRGPQRTQI------HEYNRAQIVNDVFQFARSGLMT 167
           N    GFY VNY+D  W+ +   LR     ++         +RA ++ + F+ A    + 
Sbjct: 620 NHGNLGFYLVNYEDDNWDALADQLRTNHTIRVLVLQVLGVADRAGLLFNAFKLAMGSQLN 679

Query: 168 YNRAFNILSFLENETEYAPWVAAITGFNWSGIVL 269
           Y +AF I  FL  E  Y  W    T   +  +VL
Sbjct: 680 YTKAFAITEFLRKEDSYMCWGVVGTAAKYLKMVL 713


>SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 791

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = +3

Query: 75  LRGPQRTQIHEYNRAQIVNDVFQFARSGLMTYNRAFNILSFLENETEYAPWVAAITGFNW 254
           LR PQ     E +R  +++D F  AR+ ++   +A +I  +L  ETEY PW  A    N+
Sbjct: 518 LRNPQ--VFSELDRYGLIDDSFNLARANMLNITKAMDITVYLTKETEYLPWKGAEMNLNY 575


>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
          Length = 1011

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 445  SCSTTGCHVDVTK*RSQLISEVSPHEGLVGNWRVGELVHQIRRPTGDQII 296
            SC T GCH  V + R +  S  +P +  V  W +      + +P  D ++
Sbjct: 940  SCLTKGCHQPVLRLRDKPASTATPSKSEVMQWLIYAAKRVVAKPVDDNLL 989


>SB_46032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 21 GFYRVNYDDYTWNLI 65
          GFY VNYDD  WN +
Sbjct: 19 GFYIVNYDDKNWNAL 33


>SB_25239| Best HMM Match : PKD (HMM E-Value=5.2)
          Length = 193

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 6   NKQQTGFYRVNYDDYTWNLIVIALRGPQRTQIHEYNRAQIVNDV 137
           N + TGFY V YD+  W+ +   L+    +     +RA +V D+
Sbjct: 146 NYRHTGFYLVEYDNANWDNLAAQLKA-NYSVFDTADRAGLVQDL 188


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 403 RSQLISEVSPHEGLVGNWRVGELVHQIRRPTGDQIIQSGEVGGSHKTIPDQL 248
           +S+L  E++ HE  +  W+  +    +++     + + GE+  SHK + D L
Sbjct: 368 KSELDQELAKHEAEIATWK--KRAQALKKKYEATLKEKGELESSHKELSDAL 417


>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
          Length = 2114

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 166 PTTEPSTFFLSLRMKLNTLRGSQLLLDSTGQESSCGNRPP 285
           P  EP     ++R + ++  G+QL+L+   + ++ G +PP
Sbjct: 416 PEAEPEQIAAAMRQQSDSKPGNQLVLEEEPENAARGIKPP 455


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -3

Query: 663 GVEKSVQ*VSMRSAAKDPEDLNLFSVYIVALESLVQKVEVRFSAVTKSVAINQLRLSTGT 484
           GV +S     + + A DP+  ++FSV    + S+V  ++ R   V    A++  +   G 
Sbjct: 705 GVGESYDKAELDAIATDPDASHVFSVDFKNMNSIVSTLDARICTVVDLCALSPCK--NGA 762

Query: 483 SC 478
           +C
Sbjct: 763 TC 764


>SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1761

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 224  RSVFSFILKERKNVEGSVVGHETRASELKDVVNDLCSIVFV 102
            ++ F+FIL +  N+E  V G ET  + +K++  D   + ++
Sbjct: 1298 KNPFNFILTDITNIELRVNGVETPFTSIKNIAGDAIDLYYM 1338


>SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)
          Length = 349

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 478 SVNTKSLELSSSCSTTGCHVDVTK*RSQLISEVSPHE 368
           S +T++  L +S ST+G HVD+ K  +  I E S  E
Sbjct: 159 SFDTENSSLVTSSSTSGSHVDIEKLSNGSIKESSDCE 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,741,317
Number of Sequences: 59808
Number of extensions: 412703
Number of successful extensions: 947
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)