Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0558
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44370.1 68416.m04767 expressed protein weak similarity to At...    33   0.25 
At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    30   1.8  
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain...    30   1.8  
At5g40020.1 68418.m04853 pathogenesis-related thaumatin family p...    29   3.1  
At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containi...    28   5.5  
At5g48680.1 68418.m06024 sterile alpha motif (SAM) domain-contai...    28   5.5  
At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containi...    28   7.2  
At1g66045.1 68414.m07496 hypothetical protein                          28   7.2  

>At3g44370.1 68416.m04767 expressed protein weak similarity to
           AtOXA1 [Arabidopsis thaliana] GI:6624207
          Length = 338

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 391 ISEVSPHEGLVGNWRVGELVHQIRRPTGDQIIQSGEVGGSH 269
           I  ++P+  +  +W   +  + +  PTG  + +SG V GSH
Sbjct: 215 IQRINPNLPVASSWSNAKRTNNLPAPTGRHVAESGHVSGSH 255


>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +3

Query: 6   NKQQTGFYRVNYDDYTWNLIVIALRGPQRTQ-IHEYNRAQIVNDVFQFARSGLMTYNRAF 182
           N  Q GFYRV YDD     +   LR    +Q +   +R  I++D F    +   +     
Sbjct: 540 NVDQAGFYRVKYDD----SLAAGLRNATESQSLTSIDRYGILDDSFALTMARQQSLASLL 595

Query: 183 NILSFLENETEY 218
            + S  + E +Y
Sbjct: 596 TLCSAYKKELDY 607


>At4g27910.1 68417.m04006 PHD finger protein-related / SET
           domain-containing protein (TX4) nearly identical over
           285 amino acids to trithorax 4 [Arabidopsis thaliana]
           GI:16118405; contains Pfam profiles PF00856: SET domain,
           PF00855: PWWP domain; identical to cDNA trithorax 4
           (TX4) partial cds GI:16118404
          Length = 1027

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -1

Query: 269 QDDS*PVESSNSCDPRS-----VFSFILKERKNVEGSVVGHETR 153
           +DD  P E++ +CDP S     VF   +  +K +E   + H TR
Sbjct: 800 EDDEAPAENTITCDPFSAARCRVFKRKINSKKRIEEEAIPHHTR 843


>At5g40020.1 68418.m04853 pathogenesis-related thaumatin family
           protein similar to SP|P50699 Thaumatin-like protein
           precursor {Arabidopsis thaliana}, pathogenesis-related
           group 5 protein [Brassica rapa] GI:2749943; contains
           Pfam profile PF00314: Thaumatin family
          Length = 256

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 505 VAIVHWYFLSVNTKSLELSSSCSTTGCHVDV 413
           V++V  Y L V   S  +SS C+  GCH D+
Sbjct: 133 VSLVDGYNLPVVVNSKPVSSKCTILGCHKDL 163


>At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 982

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 595 KIQILWVLGCTPHANSLNTLLNAIVQDNII 684
           +I+ +  LGCTP   S N+++  + Q+NII
Sbjct: 499 RIEKMVNLGCTPLPFSYNSVIKCLFQENII 528


>At5g48680.1 68418.m06024 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 206

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/83 (27%), Positives = 34/83 (40%)
 Frame = -1

Query: 356 ELESR*AGSSDSKTNGRSDYSKW*GGRFPQDDS*PVESSNSCDPRSVFSFILKERKNVEG 177
           +  SR      ++  GR D  KW    F  DD  P  S    DP+ +    LK +K   G
Sbjct: 26  DFSSRGKQQQVTRKRGRQDDDKWEHDLFEDDDE-PRLSKRRVDPKDL---RLKLQKKRHG 81

Query: 176 SVVGHETRASELKDVVNDLCSIV 108
           S +G    +  + D+ + L   V
Sbjct: 82  SQIGGRVFSVSVADLRDKLSRTV 104


>At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 687

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 613 VLGCTPHANSLNTLLNAIVQ 672
           + GC P   S NTLLNA V+
Sbjct: 107 IFGCEPAIRSYNTLLNAFVE 126


>At1g66045.1 68414.m07496 hypothetical protein
          Length = 144

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 475 VNTKSLELSSSCSTTGCHVDVT 410
           VNT SLE+ SS ST  C+VD +
Sbjct: 21  VNTTSLEVPSSNSTLYCYVDAS 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,534,695
Number of Sequences: 28952
Number of extensions: 286007
Number of successful extensions: 818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)