Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0556
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    28   1.5  
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    26   4.4  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    26   5.9  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    26   5.9  

>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 644 HCPLTPTSSHPRQTMLLATVK 582
           HCPLTP + H     LLA++K
Sbjct: 205 HCPLTPDTEHLVDEKLLASMK 225


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 227 KQCPRCGLVGARVGSAYSNSGGTMYIISRITPHTSFS 337
           K+CPRC    A     +S  G TM  +  +  H  F+
Sbjct: 73  KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFA 109


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 644 HCPLTPTSSHPRQTMLLATVK 582
           HCPLTP+++H   +  LA +K
Sbjct: 205 HCPLTPSTTHIVNSDSLALMK 225


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = -2

Query: 596 LATVKPSSLSLFEHICWSTTHIT 528
           ++T++PS     +++CW+ +H +
Sbjct: 96  MSTLEPSRYEYHDYLCWAASHFS 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,471
Number of Sequences: 5004
Number of extensions: 64970
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)