Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0556
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0085 - 689489-689935                                             31   1.1  
09_06_0200 + 21539963-21541271,21541912-21542013,21542095-215422...    29   2.6  
01_07_0327 + 42752697-42752711,42753937-42754127,42754822-427549...    29   3.5  
08_02_0828 - 21596570-21597337                                         29   4.6  
04_04_0470 + 25474029-25475525                                         28   6.0  
02_04_0646 + 24710348-24711838                                         28   6.0  
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    28   8.0  

>12_01_0085 - 689489-689935
          Length = 148

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 77  RRRDASSDYILSICYGFIEQSRKRCVHS*MRGQYSNE 187
           RRRD SS+   SIC G +E+  + C  +  R ++  E
Sbjct: 64  RRRDESSEMECSICLGELEEGERCCTLAACRHEFHKE 100


>09_06_0200 +
           21539963-21541271,21541912-21542013,21542095-21542291,
           21542396-21542603,21542685-21542922,21543010-21543160,
           21543538-21543849
          Length = 838

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 520 RRTVIWVVDQQICSNRDSELGFTVASNMV 606
           RRTV+WV D++      + L  T +SN+V
Sbjct: 75  RRTVVWVADRETPVTNGTTLSLTESSNLV 103


>01_07_0327 +
           42752697-42752711,42753937-42754127,42754822-42754919,
           42755792-42755880
          Length = 130

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
 Frame = -3

Query: 478 PSN--RFNGLVVTESVSAAYKACSFDETSHELNVESGPENGNVVGPGRGREASVGRDAAY 305
           P+N  R  G  V   + A Y  CS   T  E  +   P    + GPG   +  + R   Y
Sbjct: 56  PTNVMRMEGQYVASWLIACYCTCSHHSTCPEETLTQDPPLAEIAGPGETTKFGMNRRMGY 115


>08_02_0828 - 21596570-21597337
          Length = 255

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 315 SRPTLASLPRPGPTTLPFSGPDSTFSS 395
           S+P   ++ +P P  LPF+GP + FS+
Sbjct: 212 SKPHTETVVKPPPALLPFAGPAAYFSA 238


>04_04_0470 + 25474029-25475525
          Length = 498

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 389 QFVAGLVEAAGLVGRTYTFSNDQAVEAIGWGAVSSTDPVSRFS*GVL 529
           QFVA L+ +A L G  Y   +     A GW + S T     F  GV+
Sbjct: 144 QFVAYLIYSAFLTGFVYPVVSHWIWSADGWASASRTSGPLLFGSGVI 190


>02_04_0646 + 24710348-24711838
          Length = 496

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 389 QFVAGLVEAAGLVGRTYTFSNDQAVEAIGWGAVSSTDPVSRFS*GVL 529
           QFVA L+ +A L G  Y   +     A GW + S T     F  GV+
Sbjct: 144 QFVAYLIYSAFLTGFVYPVVSHWIWSADGWASASRTSGSLLFGSGVI 190


>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 266  GSAYSNSGGTMYIISRITPHTSFS 337
            GS YS++G  +Y + R+ P+T+ S
Sbjct: 2251 GSHYSSAGTVLYYLFRVEPYTTLS 2274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,829,513
Number of Sequences: 37544
Number of extensions: 521218
Number of successful extensions: 1336
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)