Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0556
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    38   0.005
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    36   0.027
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    31   0.58 
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   2.4  
U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.        29   4.1  
AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior phar...    29   4.1  
Z46794-7|CAA86777.1|  120|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U41532-7|ABD63237.1|  769|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U41532-6|AAF99908.2|  812|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    27   9.5  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    27   9.5  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    27   9.5  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    27   9.5  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 21/48 (43%), Positives = 28/48 (58%)
 Frame = +3

Query: 75  IGGGTLVPITSYPFATALLNNPGSGVFTHRCGGSILTRNAILSAASCF 218
           IGG    P  S+P+   LL+  G     HRCGGS++  N +L+AA CF
Sbjct: 59  IGGSESSP-HSWPWTVQLLSRLGH----HRCGGSLIDPNFVLTAAHCF 101



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +1

Query: 478 GSRIFNRSSVSIQLRRTVIWVVDQQICSNRDSELGFTVASNMVCLGWLDVGVRGQCQGDN 657
           GS I   S  +  LR   + ++    CS+  + +G     +M+C G+   G    CQGD+
Sbjct: 183 GSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGY-SYGKIDSCQGDS 241

Query: 658 GSPIL 672
           G P++
Sbjct: 242 GGPLM 246


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +3

Query: 21  LFFLYVSAVSATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFTHRCGGSILTRNAIL 200
           L ++ V+A  A      R+ GG      ++P+  AL N        H CG SIL +  ++
Sbjct: 9   LRYVEVNARDAAKSRIARVVGGFETVPGAFPWTAALRNKATKA---HHCGASILDKTHLI 65

Query: 201 SAASCF 218
           +AA CF
Sbjct: 66  TAAHCF 71


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 81  GGTLVPITSYPFATALLNNPGSGVFTHRCGGSILTRNAILSAASCF 218
           G T  P    P+A  +      G F   CGG+++T   +L+AA CF
Sbjct: 34  GNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCF 79


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 510  RDTGSVEDTAPHPIASTAWSLLKV*VRPTRPAASTRPA 397
            RD G VE+TAP P        +KV VRP       RP+
Sbjct: 1972 RDGGMVENTAPQPTTYQRPHPIKVQVRPATKPYRPRPS 2009


>U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 24  FFLYVSAVSATDDPS-QRIGGGTLVP-ITSYPFATALLNNPGSGVF 155
           FF Y+ + S    PS Q+ GG T++P  TS P +T   +  GS V+
Sbjct: 412 FFFYMHSFSKWKHPSSQQAGGSTILPTTTSIPMSTT-SSGTGSPVY 456


>AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior pharynx
           in excess protein1 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 24  FFLYVSAVSATDDPS-QRIGGGTLVP-ITSYPFATALLNNPGSGVF 155
           FF Y+ + S    PS Q+ GG T++P  TS P +T   +  GS V+
Sbjct: 412 FFFYMHSFSKWKHPSSQQAGGSTILPTTTSIPMSTT-SSGTGSPVY 456


>Z46794-7|CAA86777.1|  120|Caenorhabditis elegans Hypothetical
           protein R06F6.7 protein.
          Length = 120

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 424 KACSFDETSHELNVESGPENGNVVGPGRGREASVGRDAAYDVHR 293
           +A + D T  E+   + P++G ++GPG  R    G  + YD+ +
Sbjct: 64  EAPNTDSTPVEILAAAKPDSGILLGPGDNRVKRDGLPSFYDIRK 107


>U41532-7|ABD63237.1|  769|Caenorhabditis elegans Hypothetical
           protein F11D5.1c protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 249 LWGPELAQPTVILEERCTS*AASRPTLASLP 341
           LW P +  PT+   E   S  AS PT + LP
Sbjct: 402 LWKPTINSPTMSTTESTISPVASSPTASKLP 432


>U41532-6|AAF99908.2|  812|Caenorhabditis elegans Hypothetical
           protein F11D5.1a protein.
          Length = 812

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 249 LWGPELAQPTVILEERCTS*AASRPTLASLP 341
           LW P +  PT+   E   S  AS PT + LP
Sbjct: 445 LWKPTINSPTMSTTESTISPVASSPTASKLP 475


>AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical
           protein F23H11.2 protein.
          Length = 865

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = +2

Query: 182 NEKCNFVGSFLFLY---WKQCPRCGLVGARVGSAYSNSGGTMYIISR 313
           NEKCN  G + F     +K C RCG +           GG    + +
Sbjct: 6   NEKCNACGGYRFSVNDGFKYCDRCGALFENFEELEEEEGGLQQTVGQ 52


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 48   SATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFT 158
            S   +P++R+    L+P T Y      +N  G G F+
Sbjct: 2672 STGHNPTERLNLDQLIPYTQYQIRVRAINKEGDGPFS 2708


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 48   SATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFT 158
            S   +P++R+    L+P T Y      +N  G G F+
Sbjct: 2672 STGHNPTERLNLDQLIPYTQYQIRVRAINKEGDGPFS 2708


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 48   SATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFT 158
            S   +P++R+    L+P T Y      +N  G G F+
Sbjct: 2672 STGHNPTERLNLDQLIPYTQYQIRVRAINKEGDGPFS 2708


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 48   SATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFT 158
            S   +P++R+    L+P T Y      +N  G G F+
Sbjct: 2672 STGHNPTERLNLDQLIPYTQYQIRVRAINKEGDGPFS 2708


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,548,839
Number of Sequences: 27780
Number of extensions: 402657
Number of successful extensions: 995
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)