Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0556
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family...    31   0.95 
At3g29470.1 68416.m03701 hypothetical protein                          30   1.3  
At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55...    30   1.7  
At5g09670.2 68418.m01119 loricrin-related contains weak similari...    29   2.9  
At5g09670.1 68418.m01118 loricrin-related contains weak similari...    29   2.9  
At5g16520.1 68418.m01932 expressed protein                             29   3.8  
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r...    29   3.8  
At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein ...    28   6.7  
At5g18960.1 68418.m02252 far-red impaired responsive protein, pu...    28   6.7  
At4g35580.1 68417.m05055 no apical meristem (NAM) family protein...    27   8.8  
At4g04750.1 68417.m00697 sugar transporter family protein simila...    27   8.8  
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc...    27   8.8  
At2g01590.1 68415.m00083 expressed protein                             27   8.8  
At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II f...    27   8.8  

>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; Common family member: At2g22510
           [Arabidopsis thaliana]
          Length = 128

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +3

Query: 174 SILTRNAILSAASCFYTGNNAHDAVLWGPELAQPTVILEERCTS*AASRPTLASLPRPGP 353
           S +T   I    + F+T  +AH  +L    + QP  +          + P + SLP PG 
Sbjct: 7   SFVTSLVIALTFTSFFTSLSAHRHLLQSTPVTQPPALTFPPLPK--TTMPPVPSLPTPGQ 64

Query: 354 TTLPFSGP 377
            TLP   P
Sbjct: 65  QTLPQPQP 72


>At3g29470.1 68416.m03701 hypothetical protein
          Length = 174

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -3

Query: 427 YKACSFDETS-HELNVESGPENGNVVGPGRGREASVGRDAAYDVHRSSRITVG*ANSGPH 251
           Y++  F E +    + ESG   G   G GRGR    GR   Y   R S +     NS  H
Sbjct: 73  YRSAPFPEANVTSYDQESGYNRGRGCGHGRGRGRGRGRGRGYSGGRGSGVYF--KNSNSH 130

Query: 250 K 248
           K
Sbjct: 131 K 131


>At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55168
           Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 253

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 555 YLLVHHPYNSTPQLNRDTGSVEDTA 481
           YL+V HPY S P+  +D+G + DT+
Sbjct: 141 YLVVFHPYRSLPEFLQDSG-INDTS 164


>At5g09670.2 68418.m01119 loricrin-related contains weak similarity
           to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
          Length = 546

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 559 SNRDSELGFTVASNMVCLGWLDVGVRGQCQGDNGS--PILDNGA 684
           SN+DS  GFT A +++ LG   V +      DNG   P++D G+
Sbjct: 52  SNKDSASGFTQADSVLQLGRPAVSIDTFSGLDNGGVIPVVDEGS 95


>At5g09670.1 68418.m01118 loricrin-related contains weak similarity
           to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
          Length = 546

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 559 SNRDSELGFTVASNMVCLGWLDVGVRGQCQGDNGS--PILDNGA 684
           SN+DS  GFT A +++ LG   V +      DNG   P++D G+
Sbjct: 52  SNKDSASGFTQADSVLQLGRPAVSIDTFSGLDNGGVIPVVDEGS 95


>At5g16520.1 68418.m01932 expressed protein 
          Length = 608

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 535 WVVDQQICSNRDSELG--FTVASNMVCLG 615
           W+ DQQI   R +ELG  F+VAS +V +G
Sbjct: 121 WLDDQQIVKKRKTELGGTFSVASWIVFIG 149


>At3g59820.1 68416.m06675 calcium-binding mitochondrial
           protein-related contains weak similarity to
           Calcium-binding mitochondrial protein Anon-60Da
           (Swiss-Prot:P91927) [Drosophila melanogaster]
          Length = 755

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 395 VAGLVEAAGLVGRTYTFSNDQAVEAIGWGAVSSTDPVS 508
           VAG V+A   V  T +   D+ V+ +G  ++ S DPVS
Sbjct: 476 VAGRVKAEDAVRATLSSLPDEVVDTVGITSLPSEDPVS 513


>At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain; this
           cDNA may contain an anomalously spliced intron...will
           require further examination.
          Length = 765

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 613 QDRPCC*P-P*SLVRCPYLNIFAGPPPI*QYASAESRH 503
           Q R  C P P  L+RCPYL+  +      Q A  E RH
Sbjct: 386 QGRESCLPEPGPLLRCPYLDEISDSSTSFQAAPCERRH 423


>At5g18960.1 68418.m02252 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 788

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 501 GSVEDTAPHPIASTAWSLLKV*VRPTRP 418
           GSVE+T P P  + A + L V V P RP
Sbjct: 135 GSVEETTPRPSRAPAPTKLGVTVNPHRP 162


>At4g35580.1 68417.m05055 no apical meristem (NAM) family protein
           similar to TIP [Arabidopsis thaliana] GI:9408601;
           contains Pfam profile PF02365: No apical meristem (NAM)
           protein
          Length = 512

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 514 ESRHWIC*RYGSPSNRFNGLVVTESVSAAYKACSFDETSHELNVESGPENGNVVGP 347
           +S + +C  +  P +R NG+   E+   A    S D+TS +L  E+   +  V  P
Sbjct: 148 QSPYVLCRLFHKPDDRVNGVKSDEAAFTASNKYSPDDTSSDLVQETPSSDAAVEKP 203


>At4g04750.1 68417.m00697 sugar transporter family protein similar
           to  sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 461

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 416 AGLVGRTYTFSNDQAVEAIGWGAVSSTDPVSRFS*GVLLYG 538
           A LVGR YT      +  IGW A++    V     G LL G
Sbjct: 76  ADLVGRVYTIWITNILVLIGWLAIAFAKDVRLLDLGRLLQG 116


>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to SP|P87051
           Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
           (Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
           Pfam profiles PF00160: peptidyl-prolyl cis-trans
           isomerase cyclophilin-type, PF00400: WD domain G-beta
           repeat
          Length = 631

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -3

Query: 370 ENGNVVGPGRGREASVGRDAAYDVHRSSR----ITVG*ANSGPHKTAS 239
           + G+ +G G G ++  GR+   + H+S R     T+  AN+GP+   S
Sbjct: 527 QTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGS 574


>At2g01590.1 68415.m00083 expressed protein
          Length = 174

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 312 ASRPTLASLPRPGPTTLPFSGP 377
           AS PT+ASL    P+ LP S P
Sbjct: 13  ASTPTMASLTNDSPSPLPSSSP 34


>At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II
           family protein low similarity to KbaY
           (tagatose-1,6-bisphosphate aldolase) [Escherichia coli]
           GI:8895753; contains Pfam profile PF01116:
           Fructose-bisphosphate aldolase class-II
          Length = 1373

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/89 (24%), Positives = 32/89 (35%)
 Frame = +2

Query: 239 RCGLVGARVGSAYSNSGGTMYIISRITPHTSFSPTTRANDIAVLRTRFNIQFVAGLVEAA 418
           R GL   ++ +  SNSGGT ++     PH   +  T  + + +      I    G     
Sbjct: 517 RLGLNTRKLFNVISNSGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVTREGSSRKV 576

Query: 419 GLVGRTYTFSNDQAVEAIGWGAVSSTDPV 505
            L   T       A  A GWG +     V
Sbjct: 577 PLHISTVAHQLFLAGSAAGWGRIDDAGVV 605


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,628,515
Number of Sequences: 28952
Number of extensions: 375464
Number of successful extensions: 1005
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)