Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0554
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    29   0.43 
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   1.7  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   3.0  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    27   3.0  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   4.0  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.2  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   6.9  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    25   6.9  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    25   9.1  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   9.1  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   9.1  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.1  

>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 7   PTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLL 138
           P+  T  +L      ++IL T+  SL   + VSP  Y +FT LL
Sbjct: 89  PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 517 FGKSNANDIYPVVLTSISSFTEWILQN 597
           FG S AN + PV L S  SFT +++++
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 500 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 393
           +H+  +  H S+Y R+R   PG N      QS   H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/68 (23%), Positives = 28/68 (41%)
 Frame = -3

Query: 562 W*VLRGRCHWHCSFQKIRAY*RILEEGRGTQVSIVVVAATSPDQTGAEFVISHDAIMTLV 383
           W V+ GRC W CS         I  +      S+     +S  Q+ A   +S   ++ + 
Sbjct: 406 WEVMTGRCVWKCSLDSFGNAHNIDSDEDAVNESLSHSTKSSIIQSLAWGPLSDSPVLAVA 465

Query: 382 LFPAVFFV 359
           +   V+F+
Sbjct: 466 VDETVYFI 473


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 128 VNIRYFTGLTATGRSSDNATVCRIVEFSME 39
           +N+ Y + L+ATG S +  TV  I E + E
Sbjct: 94  INVEYQSNLSATGESVNTTTVSAINEDTRE 123


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 17  LPFNCYLFPWRILRSCIPSHYRWIFP 94
           LP + + F W    +C P H  WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 484 LLPKCASRLVSFGKSNANDIYPVVLTSISSFTEWILQ 594
           LL   A   V FGK+ +ND+    L +  + T+W+L+
Sbjct: 612 LLNALAPLCVFFGKAKSNDLILSHLITYLNDTDWMLR 648


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 511 VSFGKSNANDIYPVVLTSISSFTEWILQN 597
           +SF K    D YP  +  +  FT+ ++QN
Sbjct: 122 ISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 439 GWWPRLRQY*LGCPCLLPKCASRLVSFGKSNANDIYPV 552
           G W   R   +GC C+L       ++ G+ NA    PV
Sbjct: 107 GGWRATRNGAIGCACILAVFEGLGIALGRMNAEYNRPV 144


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 588 DPFSERTDAGEYYGVDVIGIALSKRYEPTSA 496
           D FS+R D G+Y G+  +GI L     P ++
Sbjct: 155 DMFSKR-DRGKYIGIYFLGICLGPAIAPIAS 184


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 204  WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFH 109
            W +LLV  +  C NS   +R+G  Q   +IF+
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN 1055


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 4   SPTTTTFQLLPVSMENSTI--LHTVALSLDLPVAVSPVKYLMFTLLLTIPNSLRRITTRM 177
           S  T    LLP++     I  ++TV LSL +    S V+ L+F +L  +   +  +T ++
Sbjct: 298 STKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTLVNELTLKL 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,344
Number of Sequences: 5004
Number of extensions: 62094
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)